Pseudomonas syringae pv. syringae HS191, PSYRH_RS11770
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae HS191, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GTAGATGGCGCCATTTCGCCGAACTGATTGCCACACTGGTCAATGCCTGAAAAACCTCGAACCTCACTCGGTTCGGGGTTTTTCAGCTTTTGGCGTGTGC TTCAGTCGCGATAGAACACCTGCACCAGGTGATAGCCGAATTTGCTCTTGATCGGCCCATGCACGACGCGTAGCGGCTTTTTGAAGATCACCTGATCGAT CGCACCGACCATTTGCCCAGGCCTGACTTCACCCAGATCGCCGCCACGTTTGCCGGACGGGCAGCTAGAATGCTTTTTAGCCAGCACGTCAAACGCCTCA CCCTTGGCAATGCGCAGCTTGAGCTGTTCGGCCTCTTCGGCGGTCTTCACCAGAATATGGCGGGCTTGGGCTTTCATGTCGCAATATCACCTGCTGCAAA AGGCTGCCATTATGCCTGCTCTTGCTGAGCGACGCCCGCGCGTCACGCGTGCCGTCCTGACGGCCGTGGTCTTTTTACTTCATTTTGTACGGTATTGATT
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| DNA Sequence for Gene |
>PSYRH_RS11770
ATGGATTTTCCGGCGCTGTTGAAGATTCTGGCCAGTCAGGACGGATCGGACCTTTACCTTTCCACCGGAGCGCCACCGTGCGCCAAGTTCAACGGTGTGC TCAAGCCACTGGGCAGCGAAACCTTCAAGCCGGGAGAGGTGGCGGTGATTGCCCAGGGGCTGATGGACGAGGAACAGAAGCTCGAGTTTCAGCGCGAACT GGAGATGAACCTCGCCGTTTCGATGGCCGGCATCGGCCGGTTCCGGATCAATATCTTCATGCAGCGTAACGAGGTGTCCATCGTCGCGCGGAATATCAAG CTGGACATCCCGCGTTTCGAAGACCTGTTCCTGCCGCCCGTACTGCTTGACGTGATCATGGAAAAGCGCGGTCTGGTGCTGTTTGTCGGGGCCACCGGTT CGGGCAAGTCGACCTCGTTGGCGGCGCTGATCGACTACCGCAACCGCAACGCCAGCGGCCATATCATCACCATCGAAGACCCGGTCGAGTTTATCCATCG CCACAAGAAGTCGATCGTCAACCAGCGCGAAGTCGGGGTCGATACCCGCAGCTTCCATGCGGCACTGAAGAACACGCTGCGCCAGGCGCCGGATGTGATT CTGATCGGCGAGATTCGCGATCGCGAGACCATGGAGCACGCGCTGGCGTTTGCCGACACCGGCCACCTGGCGATCTCGACACTGCACGCCAACAACGCCA ATCAGGCGCTGGACCGAATCATCAATTTCTTCCCGGAAGAGCGTCGCGCGCAGTTGCTGCATGACCTGGGCAACAACCTCAAGGCGTTCGTCTCGCAGCG ACTGGTCAGAACCCCGGATGGCAAGCGTCGTGCGGCGGTGGAAGTGATGATGGGCACACCGACCATTCGCGACCTGATCCAGCGCAATGAACTGACCGAG CTCAAGGGCATCATGGAGAAGTCCGGCAGCCTCGGTATGCAGACGTTCGACTCGGCGCTATTCAATCTGGCCGTCGAAGGTGCGATCAGTGAAGAAGAGG CCCTCAAGAACGCCGATTCACAAAACAACGTGCGCCTGCGCCTCAAGCTGCACAGTGAAGGCGGCGCCGGAACACTGACCACACCGCCACCGGCTCCGAC CGGCAGCAGCACGGCAAGCACCGCCGAGTGGGGGCTGGTCGATGATGACGAGCCGGGTCCGCAAGCGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATCGGAGACGCTCCTAAAGCTTCCGGGCAGAAGCTTCGTTGTGGGTCAGATCATTCAGGATGCGCGGCCGCCAGCAATTCCTGTGTGTACGGGTGCTGCG GCGCATCGAAAACGTCATGGCTGGCGCCGCGCTCGACGACTTTGCCATCCTTGACCACGATCACGTCGTGGGCAAGGGCTTTGACTACCGCCAGGTCATG GCTGATGAACAGGTACGTCAGGCCGTGCTTTTCCTGAAGTTCGCGCAACAGCGCAACGACCTGTTTCTGCACGGTCCGGTCCAGCGCCGAGGTCGGCTCA TCGAGCAGAATCAATGCGGGTTTCAGCACCAGCGCTCGGGCAATGGCGATACGCTGACGCTGGCCACCGGAAAACTCATGGGGGTAGCGATGCCGGCTCT GCGGGTCGATGCCGACTTCTTCCAGTGCCCGAATGACCTCGGCATCGCATTTCGCCGGGTCGTACTGGCTGTGTACCTCCAGTCCTTCACTGATGATCTG
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| Amino Acid Sequence |
>pilus retraction protein PilT
MDFPALLKILASQDGSDLYLSTGAPPCAKFNGVLKPLGSETFKPGEVAVIAQGLMDEEQKLEFQRELEMNLAVSMAGIGRFRINIFMQRNEVSIVARNIK LDIPRFEDLFLPPVLLDVIMEKRGLVLFVGATGSGKSTSLAALIDYRNRNASGHIITIEDPVEFIHRHKKSIVNQREVGVDTRSFHAALKNTLRQAPDVI LIGEIRDRETMEHALAFADTGHLAISTLHANNANQALDRIINFFPEERRAQLLHDLGNNLKAFVSQRLVRTPDGKRRAAVEVMMGTPTIRDLIQRNELTE LKGIMEKSGSLGMQTFDSALFNLAVEGAISEEEALKNADSQNNVRLRLKLHSEGGAGTLTTPPPAPTGSSTASTAEWGLVDDDEPGPQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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