Pseudomonas syringae pv. syringae 41a, PSS41A_RS22735
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae strain 41a 41A09, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTCTTCGAGTTGCTTTTGCTCGAAGGGTTCCAGGCCGGGCTGTCGTGGATCACGATTCTCAAGCGGCGGGCGCGTTATCGCGAAGTGCTGCACGGTTTCG ACGTCGAGCGCCTGGCGCAGCTGAGCGATGCCGAAATAGAGGCGCTGATGCTTGATCCGAGCATCATCCGCAACCGCCTCAAGCTCAAGGCGGTGCGCAC CAATGCGCGGGCCTGGCTGGCGCTGGAAGACCCGGTCGCGCTGCTCTGGTCGTTTGTCGGCGGCACCCCGAAGATCAATCACTTCAAGGATCGCAGCGAA GTCCCGGCGATTACCGCCGAGGCCGAAGCGATGAGCAAAGCACTGAAAAAGGCCGGTTTCACCTTTGTCGGCCCGACCATCTGTTACGCCTACATGCAGG CCAGCGGCATGGTCATGGACCACACCGTCGATTGCGATCGGTATGCGATCCTGAGCCGCTGACGGTTACACTACCCGCCTCGAGAATCTGGGAGTCATCT
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| DNA Sequence for Gene |
>PSS41A_RS22735
GTGGATAAGTTCAAAGGCGCCGTAATGGTCGGGGCGTTGCGATTGTTTGCGCTGTTGCCGTGGCGCGCGGTGCAGTGGACAGGCACCGCGATTGGCTGGC TGATGTGGAAGCTGCCCAACCGTTCGCGGGAAGTGGCACGGATCAATCTGTCCAAGTGCTTTCCCGAGTTGAGCGAGCCGGAGCTGGAAACGCTCGTCGG TCGCAGCCTGATGGACATTGGCAAGACCCTGACCGAAAGCGCCTGTGCGTGGATCTGGCCGGCACAGAAATCGATCGACCTGGTGCGTGAAGTCGAAGGG CTCGATGTGCTCAAGGACGCGCTGGCGTCCGGCAAGGGCGTGGTTGGCATCACCAGTCATCTGGGCAACTGGGAAGTGCTCAATCACTTCTACTGCAGCC AGTGCAAGCCGATCATTTTCTATCGTCCACCCAAGCTGAAAGCCGTGGACGATCTGTTGCGCAAGCAGCGTGTGCAGTTGGGCAACCGGGTGGCGGCGTC GACCAAGGAAGGCATTCTCAGTGTGATCAAGGAAGTGCGCAAAGGCGGCTCGGTGGGCATTCCGGCCGATCCGGAGCCGGCCGAATCAGCCGGCATCTTC GTGCCCTTCTGCGGCACCATGGCCCTGACCAGCAAGTTCGTGCCGAACATGCTGGCCGGTGGCAAGGCAGTCGGCGTATTCCTGCACGCCATGCGCCTGC CGGACGGATCGGGTTACAAAGTGGTACTCGAAGCGGCTCCGGAAGCCATGTACAGCACCGACACCGAAACCTCGGCAGCGGCGATGAGCAAAGTGGTCGA GAAATACGTGCGGGCGTACCCGAGCCAGTACATGTGGACCATGAAGCGCTTCAAGAAACGCCCGCCAGGCGAGGCACGCTGGTATTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAAAGAACGGACGCGGAGCGTCCTGAACGGCATGCCCACGCTGGATCATGGGCACGATTGTTTCCCTCAACTGGCCGCCGCAATCAACCCGCGTCGTCCC AGCGCCACCTGAGTCCCTTCCGGACTCATTCGTATCAGGTTCACCGGGATGGATTTGGCCGCAGGGGTGTTGCCGTGTTTATCCCGGTTGGCCAGTGGCA GCAGGCCGTTGGTTTCCGGGTAGTACGCGGCGCAGCAACCCTGCGGCACGTCGTAGGGAATGACTTTGAAACCCGCTGCACGCCGCGCCGTGGTTGGGTC GAGCGCCGTCTGAAACTCGATGTAGTCCCCGGCCTTCAGCCCCAGGCGTTCGATGTCCTGCGGGTTGAGCATCACCACCATGCGATCGCCAAAGATGTCC CGATAACGGTCATCGTTGGAATACACCGTGGTGTTGAACTGGTCATGGCTGCGGATCGTCATCAACTGCAAATGCTCGGCGCCCGGCGGCGTGTCGTCTT
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| Amino Acid Sequence |
>lipid A biosynthesis lauroyl acyltransferase
MDKFKGAVMVGALRLFALLPWRAVQWTGTAIGWLMWKLPNRSREVARINLSKCFPELSEPELETLVGRSLMDIGKTLTESACAWIWPAQKSIDLVREVEG LDVLKDALASGKGVVGITSHLGNWEVLNHFYCSQCKPIIFYRPPKLKAVDDLLRKQRVQLGNRVAASTKEGILSVIKEVRKGGSVGIPADPEPAESAGIF VPFCGTMALTSKFVPNMLAGGKAVGVFLHAMRLPDGSGYKVVLEAAPEAMYSTDTETSAAAMSKVVEKYVRAYPSQYMWTMKRFKKRPPGEARWY
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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