Pseudomonas syringae pv. syringae 41a, PSS41A_RS22135
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae strain 41a 41A08, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGACGCCACTGGTTCAAAGTACGCCCACACCGGTTTGTTCAGTGCGACCGCCATCCCGACTTCGAATGCGGTGCCTGAATCCGGCTCCAGACCACGGAA CACGTTGAGGTTGACCAGCATGGCAGTGCAGCGGTGGATCATCGCGACATTCATCGAGTAAATCTGCTGTGCGGTTTCATGCGCTGTCCGTCCGTGCGTG ACCTCATTGTCGAACGGGTACAAACCCTCAAGCCCGTGTGCGGCGCACAATGCCTTGAGATAGCGTCCATGTTCCACGGCGTCAGTCCTGAACACGTCGA AGCCTGCGAGATAAACCAGTGGCGCGTGCATATTCGTCTCTCGGCTGCAGATATTATCGCGCCGATTCTAAGGCGGACCGTCTGCTCGCGATACATGCCA TTGATCGGCTGGAACACGAACAGCAGGCGTTTGCGCTGGAATCTGTACGGATAACCAGTATCCTTGTTCAGTCTGCTCATTTGTCATGTGAACGCTGGCC
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| DNA Sequence for Gene |
>PSS41A_RS22135
TTGAATAACTCGCCCCTCGACAACCCGTTTTATTACCTGGAAAACTTCCGTCAGGTCCTTGACTGGATTGCCCGGCGCTATGATGACCTGCTCGATGCGA GCGAGCGCCGCTTCATCAGCGAGTTTGCCGAGCTGCCGGTGCCCTCCCAGGGTTTGCTGGTGCGCATGGTGATGCGCAAAGGCGTGTTGTTTCGGGCCAG CAAACTCGGTTATGTCGAGATTGGCGACCCTCATGACGCGGTATTGCCGCTGCTGGCGCGGGAGTGGGTCGACAGCGCTCCGCCGCTGGGCTTGAGCGAG CTGTTCCAGCTGCTGCGTCGGGATGAGTTGAGTCACTGCTTCAAAGACCACGCAGTCAAGGGCCCTGAGCGCAAACAGGAATGGCTCGAGCGCCTGCAGC CGATGTACCCGTCGCCGCAGTCCCTCGAACAATGGCACCCGACCTTGCCCGACGCCGTATTCGGCCTGAAGATCATGCCGCTGTGCGATCGCCTGCGCTT GCTGTACTTCGGCAATCTGTACCAGGAATGGTCAGAATTCGTGCTGGCTGACCTGGGTATCTACCGCTACGAGAAAGTCGAGTTTTCGCTGGAGTCGCGC GGCATCAATCAGCGTGCCGACATCGATGTGTGCCTGCAATTGCATGCCTGTCGGGAAGCGCTGGAAACCTGCCTGGAACTGCGTGTGCTGGCCGAGCGTG TCATTGCCATCGAGTGCGGTAACCCGTGGTTGCTCATGCGGCGCGGCAAACTGCTGTTTCGTATCGGGCAACAGGCCGAACGCGTGCAGGACTGGCCTCT GGCGATTGCGGTGTATTGTCAGTCGGGTTACCCCGGCGCGCGCTCAAGGCAAATCCGCGTGCTGGAGCGCAACGCCGAGTACGCAGCGGCGCTGGCGCTG GCGGAGCAGGCCCGTCTGGCACCGGAAAGTGATGCGGAGGTCCAGCACCTGTCACGCGTCTTGCCACGCCTGCAACGCAAGCTCGGCCTGACGGCCGCGC GCAAGCGCACGGTGCGCGCCATTGCGCGGTTGGACGTACAGGTCACGCCAGTGTCAGGGATGAGTGTCGAGCGTCTGATACTCCTGCACCTTGAAGAAGA GCAGGGTGGGGAGGTGCATTATGTCGAAAATGCGCTGATCAATTCACTGTTCGGGCTGCTGTGCTGGCGAGCCATTTTCGCCCCGTTGCCGGGTGCATTC TTTCATCCGTTTCACAGTGCGCCGAGTGATCTCTACAGCCCTGACTTCTATCAGCGCAGGGCGACGCTGTTCGATGCCTGTCTGCTGCAACTTGAATCGG GTGAATACCTGGCGACCATTCGTGAGCATTTTGAAAGCAAATACGGCCTGCAATCACCGTTTGTTTTCTGGGGTGCACTGACGCCTGAGCTTCTTGAACA GGCGCTTTACTGTTTGCCGGCAGAACACTTGCTTCGCTGGTTTCGTCGGCTGTTGCAGGACATAAAAGCCAACCGTACAGGGATGCCCGATCTGATCCAG TTTTTTCCGGAACAGCGTCGTTATCGAATGATCGAGGTCAAGGGGCCGGGTGACCGCCTCCAGGACAACCAACTGCGCTGGCTGGACTTCTGTGCCGAGC ATGGCATGCCGGTGGAGGTGTGTTACGTGCAATGGGCGACTGACAACAGTGTCTGTGCCAGTAGCGACCGGTCAGACCTTCAAGGGGCCTTGTGCCCATC CTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTGCCCTTGTGGTCTGCATCGTGGGGCTGTTTCGAGTCGTGAGGCTTGTCATCCGCACTGCCGTTCTTTCCGGGCAAGGGGTCAATACCTTTGGTGCCGG GGCTTGTGCCTGGTGCGCCGGGGCTGGTTCCATCGACGTTCTTTTCCGCTTCGGTGCCCGGTACTTTTGGGTTGTCGCTGACCGGGTTGGTCGGGCCGGT CGAACCTGCAAATGCACTGGTGCCCGACAGGGCCAAAAATGCCGCGAGGCTTATCGCCCCCAATCTATTCCTGATCATTATGCAAACTCCGTGACTACCT GATTGAAACAGTACTTGATTGAAACGGTGACGCGAGAAGGGTAGACCCGCGGGCAGGGCATGGTCCTGCCCGCGTAAGACGCCTGATTATTGAGTCTTGG TCTTTTCAGTGACGGTGCTCTTGTCGTGCGTGCCGTGTGTAGCCTTGTCGTGCTTCATCGAACGCTCGGCTGCCGCTTCTTTGCTTTCAGTCTGCACGCC
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| Amino Acid Sequence |
>nuclease
MNNSPLDNPFYYLENFRQVLDWIARRYDDLLDASERRFISEFAELPVPSQGLLVRMVMRKGVLFRASKLGYVEIGDPHDAVLPLLAREWVDSAPPLGLSE LFQLLRRDELSHCFKDHAVKGPERKQEWLERLQPMYPSPQSLEQWHPTLPDAVFGLKIMPLCDRLRLLYFGNLYQEWSEFVLADLGIYRYEKVEFSLESR GINQRADIDVCLQLHACREALETCLELRVLAERVIAIECGNPWLLMRRGKLLFRIGQQAERVQDWPLAIAVYCQSGYPGARSRQIRVLERNAEYAAALAL AEQARLAPESDAEVQHLSRVLPRLQRKLGLTAARKRTVRAIARLDVQVTPVSGMSVERLILLHLEEEQGGEVHYVENALINSLFGLLCWRAIFAPLPGAF FHPFHSAPSDLYSPDFYQRRATLFDACLLQLESGEYLATIREHFESKYGLQSPFVFWGALTPELLEQALYCLPAEHLLRWFRRLLQDIKANRTGMPDLIQ FFPEQRRYRMIEVKGPGDRLQDNQLRWLDFCAEHGMPVEVCYVQWATDNSVCASSDRSDLQGALCPS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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