Pseudomonas syringae pv. syringae 41a, PSS41A_RS21555

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas syringae pv. syringae strain 41a 41A07, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AGGAAGGCCGCTTGCCCAAGGGCGGCGAAGACGCGTTGTCACTGAGTGTCGACGGCACCGATTACACGAGCACTGGCACCCTGCTGTTTACCGATGTCGC AGTAGACCGGACTACCGGCCAGGTTTCGTTGCGTGCCCGCTTTGCCAATCCCAAGGGCGTGCTGCTGCCCGGCATGTACGTGCGGGTACGCACACCGCAA CGCGTTGACAGCAACGCCATTCTTGTTCCGCAGCGCGCCGTTCAGCGCTCCGGTGACGGTGCAGCCCGCGTGCTGGTGATTGCCCAGGACGGCACGGTTG AAGCGCGCCCGGTAAAAACCGGGGCGATGCAGGATTCGCGCTGGCAGATCACTGAAGGCCTGAAGGCAGGCGAACAGGTCATTGTCGGCAACATGACCGG GCTCAGCGCCGGTGACAAGGTCGCCCGCAAATCGCCCTCCGCCCAGCCGCAGGCCAAGGCGCAATAAAGCCGCCTTCAGCGCGACCGAGGATCACTGTCC
DNA Sequence for Gene
>PSS41A_RS21555
ATGTCTCTCTTTTTTATCAAGCGCCCTAACTTCGCCTGGGTACTCGCCCTGTTCATCTTGCTCGCCGGGTTGATGGCTCTGCCGTCTTTGCCTGTGGCGC AGTACCCGGACGTGGCGCCACCGCAGATCACCATCACCGCAACCTACCCCGGCGCATCCGCGAAAGTGCTGGTCGATTCGGTGACCAGCGTTATCGAGGA CGAGCTCAACGGTGCCAAGGGGATGCTGTATTACGAGTCGACCAGCAACTCGACCGGCAGCGCGGAAATCAACGTGACGTTCGTGCCGGGCACCAACCCG GACCTGGCTCAGGTCGAGGTACAGAACCGTATCAAGAAAGCCGAAGCACGCTTGCCGCAGACGGTCCTCAGCCAGGGCCTGCAGGTCGAACAGGCCAGCT CCGGTTTTCTGTTGATCTACACACTGAACTACAAGGACGGCGCGGCCAACAAGGATACCGTCGCGCTGGCCGACTACGCGGCACGCAACGTCAATAACGA AATAAGCCGGGTGAACGGTGTCGGCAGGCTGCAATTCTTCGCTGCCGAAGCCGCGATGCGGGTATGGATCGATCCGCAGAAGCTGGTGGGTTTCGGCTTG TCCATCGACGACGTGAATGCCGCCATCCGGGCGCAGAACGTGCAGGTTCCGGCAGGCAGTTTCGGCAGCAGCCCGGGCTCGTCATTGCAGGAGTTGACCG CCACCCTGGCGGTCAAGGGCACTTTGGACAACCCGGAAGAGTTCGGGCGCATCGTTCTGCGTGCCAACGAGGACGGCTCTGCGGTGCACCTGTCCGATGT GGCGCGGGTGGCGGTCGGCAGCCAGGATTACAGCTTCGAATCACGCCTGAACGGGCAACGGGCCGTCGCCGGTGCCGTTCAGCTGTCGCCGGGTGCCAAC GCGATCCAGACGGCCAGAGCCGTCGAGCAGCGGCTCACCGAGCTGTCGGTCAATTTCCCGGAAGGCGTCGGGTTTTCGATACCGTACGACACCTCGCGCT TCGTTGACGTGGCGATCGACAAGGTGATCTACACCCTCGTTGAAGCCATGGTGCTGGTGTTTCTGGTGATGTTCCTGTTTCTGCAGAACATCCGTTACAC GCTGATCCCTACCATCGTGGTCCCGGTGTGCCTGGCAGGGACACTGGCGATCATGTACCTGATGGGCTTCTCGGTGAACATGATGACCATGTTCGGCATG GTGCTGGCCATTGGTATTCTGGTCGACGACGCCATTGTGGTGGTGGAAAACGTCGAGCGGATCATGGCTGAAGAAGGCCTCTCTCCCGCCGCCGCCACGG TCAAGGCGATGCAGCAGGTTTCCGGGGCGATTTTCGGCATCACGCTGGTCCTGGCCGCCGTGTTTCTGCCACTGGCGTTCATGGGCGGCTCGGTCGGGGT CATCTACCAGCAGTTCTCGCTGTCGCTGGCCGTGTCGATTCTGTTTTCGGGTTTCCTGGCCCTGACGTTCACCCCCGCGCTGTGTGCCACGCTGCTCAAG CCGATCCCGGCCGGGCACCATGAAAAGCGGGGGTTCTTCGGTGGTTTCAATCGCCTGTTCGGCACGTTCACCGACCGTTACGAGCGCGTCAGCTCCAGCA TGATCAAGCGCGCCGGCCGCTACATGCTGCTGTACCTGGGTATCGTCGGTCTGCTGGGCTTTTTCTACCTGCGCCTGCCGGAGTCCTTTGTGCCCGTGGA AGACCAGGGCTATCTCATCATCGACGTGCAACTGCCTCCCGGCGCCACCCGTTCACGTACCGACCTCACCGCGCAATTGCTTGAGAACTACATGCTGTCC CGCGAAGCCACTGGCGCGGTGACCATGCTGCTGGGGTTCAGCTTCTCGGGCATGGGTGAAAACGCGGGTCTTGCGTTCCCGACCCTGAAGGACTGGTCGG AGCGCGGCAAGGGCCAGTCGGCGGCTGAAGAAGCGGCGGCGTTCAACCAGCATTTTGCCGGGCTCGGCGACGGCACGGTGATGGCAGTGACGCCACCGCC TATCGACGGCCTGGGCACCTCGGGCGGCTTCTCGCTGCGTCTGCAGGACCGCGCAGGCCTGGGCCGTGAAGCCTTGCTGGCGGCACGCGACAAGCTGCTC GGCGAGGCCAACGGCAACCCGAAGATTCTCTACGCGATGATGGAAGGCCTGGCCGAAGCGCCGCAATTGCGCCTGAACATCGACCGCGAAAAAGCCCGTG CGCTTGGGGTGAGTTTCGAGTCGATCAGCAACGCCCTGTCCACCGCCTTCGGTTCCTCGGTGATCAGTGATTTCGCCAATGCCGGACGTCAACAGCGCGT GGTCGTGCAGGCCGAGCAGAGTTCGCGAATGACCCCGGAAAGCGTGCTCAAACTCTACGTGCCCAACAGCAGCGGCACGCTGGTGCCGTTGGGTGCCTTC GTTTCGACACACTGGGAACAAGGCCCGGTGCAGATCGCACGCTACAACGGCTACCCCGCGTTCAGGATTTCCGGCGACGCAGCGCCGGGGGTCAGTACCG GCGAGGCCATGGCTGAAATCGAACGGATCGTTTCCGAGCTGCCGCAAGGCATCGGTTACGAATGGACCGGCCTCTCCTATCAGGAAAGACTCGCCAGCGG CCAGGCGGTCGGACTGTTCGGCCTGGCACTGCTGGTGGTGTTCCTGCTGCTGGTCGCGCTCTATGAGAGCTGGGCGATCCCGCTGGTGGTGATGCTGATC GTACCCGTCGGCGCGCTGGGTTCCGTGCTGGCCGTGACGGCCGTCGGCATGCCCAACGATGTGTATTTCAAAGTCGGCCTGATCACCATCATCGGGCTGG CGGCGAAAAACGCGATTCTCATCGTCGAGTTCGCCAAGGAGCTGTGGGATCAGGGCCATTCACTGCGCGACGCGGCACTTCAGGCTGCGCGGCTGCGCTT TCGGCCGATTGTCATGACCTCGCTGGCCTTCATTCTCGGCGTGGTGCCGCTGACCCTCGCCACCGGCGCGGGGGCTGCGAGCCAGCGCGCCATCGGTACA GGTGTTATCGGCGGCATGCTCAGTGCAACGTTGCTGGGCGTGGTACTGGTGCCGATATTCTTCGTCTGGGTGTTATCCGCGCTGCGCCGCAAACCGCATG CGCAACAGATTGCCGACGATCAGCAACTGTCTGAGAAGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TAGCCAAGAGGCGGCCGACGGGCATCAATCGCGCTGGCCCGACCTTGGCTCCGTGTCGGCTCGCGCATCCGCCGAGGCCTTGACGCGGGTCCAGGCCGGC AATGTGCCGGTCGCGTTTTCCGACGCCACATTCACCCGGTTGCGGCCCTGCGATTTGGCGGCATACAACGCGCGGTCAGCAAGCTCGATCAGGCCTCGCT GATCGAGCTGACGATCCGTGCCGACGAATGTCGCGACACCCAGGCTGATCGTCACGATGCCAAACGGGCTGGCAGGATGTTCGATCTGCTCGTCACGGAT TGCCTGAAGGATCTTCTCGGCCACCTGGCGAGCGTTCGACTCATCAGTACCGGGCAACACCACCGCGATCTCTTCACCACCATAGCGGGCGGCGACGTCA CTGGGACGGCGAATGAACTGCTCGACCACTCGAGCCAGCGCAATCAGGCATTCATCACCGGCCAAATGACCGTAATGATCGTTGTAGCGTTTGAAATGAT
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MSLFFIKRPNFAWVLALFILLAGLMALPSLPVAQYPDVAPPQITITATYPGASAKVLVDSVTSVIEDELNGAKGMLYYESTSNSTGSAEINVTFVPGTNP DLAQVEVQNRIKKAEARLPQTVLSQGLQVEQASSGFLLIYTLNYKDGAANKDTVALADYAARNVNNEISRVNGVGRLQFFAAEAAMRVWIDPQKLVGFGL SIDDVNAAIRAQNVQVPAGSFGSSPGSSLQELTATLAVKGTLDNPEEFGRIVLRANEDGSAVHLSDVARVAVGSQDYSFESRLNGQRAVAGAVQLSPGAN AIQTARAVEQRLTELSVNFPEGVGFSIPYDTSRFVDVAIDKVIYTLVEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGTLAIMYLMGFSVNMMTMFGM VLAIGILVDDAIVVVENVERIMAEEGLSPAAATVKAMQQVSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLLK PIPAGHHEKRGFFGGFNRLFGTFTDRYERVSSSMIKRAGRYMLLYLGIVGLLGFFYLRLPESFVPVEDQGYLIIDVQLPPGATRSRTDLTAQLLENYMLS REATGAVTMLLGFSFSGMGENAGLAFPTLKDWSERGKGQSAAEEAAAFNQHFAGLGDGTVMAVTPPPIDGLGTSGGFSLRLQDRAGLGREALLAARDKLL GEANGNPKILYAMMEGLAEAPQLRLNIDREKARALGVSFESISNALSTAFGSSVISDFANAGRQQRVVVQAEQSSRMTPESVLKLYVPNSSGTLVPLGAF VSTHWEQGPVQIARYNGYPAFRISGDAAPGVSTGEAMAEIERIVSELPQGIGYEWTGLSYQERLASGQAVGLFGLALLVVFLLLVALYESWAIPLVVMLI VPVGALGSVLAVTAVGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWDQGHSLRDAALQAARLRFRPIVMTSLAFILGVVPLTLATGAGAASQRAIGT GVIGGMLSATLLGVVLVPIFFVWVLSALRRKPHAQQIADDQQLSEK
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site