Pseudomonas syringae pv. syringae 41a, PSS41A_RS17040
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae strain 41a 41A05, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGTGCTGGGGATCCTCTATGAAAGCTACATTCATCCGCTGACGATCCTCTCAACGCTTCCGTCCGCAGGGGTTGGCGCATTGCTGACGATCTATGTAC TGGGCAGCGAGTTCAGTCTGATCTCCCTGTTGGGGCTGTTCCTGCTGATTGGCGTGGTCAAGAAAAACGCGATCATGATGATCGACCTTGCCCTGCATCT GGAGCGCGAACAGGGAATGACGCCGCAAGAGTCAATCCGTAGCGCCTGCCTGCAGCGCCTGCGGCCCATTCTGATGACTACGATGGCCGCCATCCTGGGC GCCTTGCCATTGCTGCTGAGCACCGCCGAAGGCGCGGAAATGCGCAAGCCGCTGGGCTTGACCATCATCGGCGGCCTGATCTTCAGCCAGGTCCTGACCC TCTATACCACCCCTGTGGTTTACCTTTATCTCGACCGTCTGCGCCATCGTTACAACAAATGGCGTGGCGTGCGTACCGATGCTGCTCTGGAAACTCCGCT
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| DNA Sequence for Gene |
>PSS41A_RS17040
ATGACCGAACGCCTGGTATTCACCTCCCGCCCGACAGGGCTGATTCGTCCATTCGCGCTGGGGCTTTGCGTTGTGCTGCTCAGCGCCTGCGCTGTGGGTC CGGATTACCAGAAGCCGTCCATGGCCGCACCCGCGCAGTTCAAGGCTGCGCAGGGCTGGCGTGCGGCCACGCCGAGTGACGGGATGGCCAAAGGTGCGTG GTGGGAGGTCTACAAGGACCCGCAACTGAACGCGCTGGTCGAGCGCCTGAACACGTCCAATCAGACCGTCGCCCAGTACGATGCGCAGTATCGACAGGCA CAAACACTGGTGCGCAGCTCCAGGGCTGCCTTCCTGCCGACCCTCGACCTGACGACTGGCAAGACGCGCTCGGGGCAGGGCACTGGCACCTCGAACACCG GCACCAGTGCCTCGGGGATTCGCAACAGTTACAACGCGCAGCTGGGCGTCAGTTGGGAGGCCGACGTCTGGGGCAAGCTGCGTCGCGGGCTGGAGGCCGA CACTGCCAATGCGCAGGCGAGTCTTGCCGACCTGGCGGCGATGCGTCTGAGCCTGCAATCGGAGCTGGTACAGAATTACCTGCAATTGCGCGTGATCGAT GAACAGAAACGCCTGCTGGAATCCACGGTGGATGCCTACCAGCGCTCCCTGACCCTGACGCAGAACCAGTACCGCGCCGGTATTTCCGGAAGTGACGCTG TCGCGCAGGCGCAGACGCAGTTGAAAAGCACCCAGGCCGACCTGATCGATCTGGCCTGGCAGCGTGCGCAGTATGAGAACGCCATCGCCGTACTGATGGG GATGGCACCGGCAGACTTCAATCTGCCCGCCAGCACCTCGATTCCGCAGTTGCCGCAGATCCCGCCAGGCCTGCCTTCGCAGTTGCTTGAACGCCGCCCT GACATTGCCGCCGCCGAGCGCTCGGTGATGGGTGCCAATGCCAACATTGGCGTGGCCAAGGCCGCTTACTATCCGGACTTCACGCTGAGCATGAGCGGCG GTTACAGCAGCAGTACCTTTGCCAACTGGATCAGCCTGCCTAACCGCTTCTGGTCGGTGGGCCCGCAGCTGGCGCTGACCCTGTTCGACGGTGGCAGGCG CTCGGCCGAAGTCGATCGTACCGAAGCCGTGTATGACCAGACTGTCGCCCAGTACCGGCAGACCGTGCTGAACGGTTTTCAGGAGGTCGAGAACTATCTG GTTCAGCTCAAGGTATACGAGCAGGAAGCTGCGGTACGCCAGGAAGCGCTGGTCTCGGCTCGTGATTCGCTGCGCCTGACCAACAATCAATACAAGGCCG GGCTGATTGGTTACCTGGACGTCGTCAATGTTCAGGCCACCGCATTGAGCAACGAGCGCAGTGTGCTTAGCGTGCTGCAAAGCAGGTTGATTGCCAGCGT TCAATTGATCGCCGCACTGGGCGGAGGCTGGAATGCCGAGACAGGTTTGACGCTCCAGGAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTATTTCGGGTTCAAAAAGCAGTTTTCCAGTGAACTGTTCGCATTAATCGAAAAAATAATAGCTACTCGCCATCTTTTCGACCGGCTGCCGCGACATTTG GCCGCTAATGCGTACAATCACCCGCACAAGATCGGCATGGACGCGCTCATTGGTTTCCAGGTGCGTTTATGTTGATTGGCAGCTACATCCCTTCACTCGT CGTTATCTCGATTCTCGTCGCTATTCTTGCCGCGTATACGGCCCTCGATCTGGTGGGCCGCATCGTTTCGGCCAGGGGCCGTGCTGTCCACTTATGGACT GCGGGCGGCGCTATCGCGATGGGCGTTGGCACCTGGTCGACACATTTCATCGGTATGCTGGCGTTCGTATTGCCCATCGACCTGGGCTACGACGTGCCAC TGGTGCTGCTTTCGCTGTTGATCGCCATCGGCTTTTCAGGGTTCGCCCTGTGGCTCGCCACCCAGCCAAGATTGCCCGCGCTGCAACTGAGCCTGGGTGC
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| Amino Acid Sequence |
>RND transporter
MTERLVFTSRPTGLIRPFALGLCVVLLSACAVGPDYQKPSMAAPAQFKAAQGWRAATPSDGMAKGAWWEVYKDPQLNALVERLNTSNQTVAQYDAQYRQA QTLVRSSRAAFLPTLDLTTGKTRSGQGTGTSNTGTSASGIRNSYNAQLGVSWEADVWGKLRRGLEADTANAQASLADLAAMRLSLQSELVQNYLQLRVID EQKRLLESTVDAYQRSLTLTQNQYRAGISGSDAVAQAQTQLKSTQADLIDLAWQRAQYENAIAVLMGMAPADFNLPASTSIPQLPQIPPGLPSQLLERRP DIAAAERSVMGANANIGVAKAAYYPDFTLSMSGGYSSSTFANWISLPNRFWSVGPQLALTLFDGGRRSAEVDRTEAVYDQTVAQYRQTVLNGFQEVENYL VQLKVYEQEAAVRQEALVSARDSLRLTNNQYKAGLIGYLDVVNVQATALSNERSVLSVLQSRLIASVQLIAALGGGWNAETGLTLQE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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