Pseudomonas syringae pv. syringae 41a, PSS41A_RS13215
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae strain 41a 41A03, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCGTGTTCACCGACTGCACCGACGAGATGACCATCGTGCGTGAAGAAATCTTCGGCCCGGTGATGAGCATCCTCGGTTACGACACCGAAGATGAAGTGG TGCGCCGCGCCAACGACACCGACTTCGGCCTGGCCGCTGGCATCGTGACCCGCGACCTGAACCGCGCCCACCGCGTGATTCATCTGCTGGAAGCCGGTAT CTGCTGGATCAACGCCTGGGGCGAGTCGGCGGCACAAATGCCGGTCGGCGGTTACAAGCAGTCGGGCGTCGGTCGTGAGAACGGCATCAGCTCGCTGGCT CAGTACACGCGCATCAAGTCGGTACAGATCGAGCTGGGCGATTACGCCTCGGTTTTCTAAACACGGTTTCAGTGGCACGCGGCAGGCCTCAAGCAGACGC ACTCAAAAGCTGCCTGCCGCACCCCATTTTCACGAGTATCGCCTGGCTGCTTCTGCTTGCGGCCCAGGCTTGAAACTCGCAGCTCTATGAGGGAGCCTCT
|
|
| DNA Sequence for Gene |
>PSS41A_RS13215
ATGACAACTCAATCCGAATACGATTACATCATCATTGGTGCCGGCTCGGCCGGTAACACCCTGGCAGCCCGTCTCACCGAAGACGCAGGCGTCACTGTTC TGCTGCTCGAAGCCGGTGGCCCGGACTACCGTCTGGATTTCCGTACCCAGATGCCTGCCGCCCTGGCATTCCCGCTGCAGGGCCGTCGCTACAACTGGGC CTACGAGACCGAGCCAGAGCCGCACATGAACAACCGCCGGATGGAATGCGGTCGCGGTAAAGGCCTGGGCGGCTCATCGCTGATCAACGGCATGTGCTAT ATCCGCGGCAACGCGATGGACTACGATGGCTGGGCCAAGGAGCCGGGTCTCGAAGACTGGAGCTACCTCGATTGCCTGCCGTACTTCCGCAAGGCGGAAA CCCGCGACATCGGCCCGAATGACTACCACGGTGGTGAAGGTCCGGTCAGCGTGGCCACACCCAAGGCGGGCAACAATCCGCTGTTCCACGCGATGGTCGA GGCGGGCGTGCAAGCCGGTTTCCCGCGCACTGACGACCTCAACGGTTATCAGCAGGAAGGTTTCGGTCCAATGGACCGCACCGTGACGCCTAATGGCCGT CGCGCCAGTACCGCCCGTGGTTATCTGGACGAGGCCAAGAAGCGCTCGACCCTGACCATCGTCACTCACGCGCTTACCGATCGCATCCTGTTCGAAGGCA AGCGTGCCGTCGGCGTGGCGTATCTGGTGGGCGACAGCGACACCCGCATCCAGGCCCGTGCCCGCAAGGAAGTGCTGCTGTGTGGCGGCGCAATCGCTTC GCCACAGATTCTCCAGCGGTCCGGCGTCGGCCCGGCCGAAGTGCTGAACAAGCTGGATATTCCGGTGGTTCATGACCTGCCGGGCGTTGGTCAGAACCTT CAGGATCACCTGGAGATGTACCTGCAGTACGCCTGCACCCAGCCAGTGTCGCTGTATCCTTCGCTGAAGTGGTGGAACCAGCCTGCTATCGGTGCCGAGT GGATGTTCCTCGGTACAGGTATCGGTGCGAGCAACCAGTTTGAAGCCGGTGGTTTCATTCGCTCCAGTGAAGCGTTCGAATGGCCGAACATTCAGTACCA CTTCCTGCCGGTCGCGATTAACTACAACGGCACCAAGGGCGTTCAGGAACACGGTTTCCAGGCTCACGTCGGCTCCATGCGTTCGCCGAGCCGTGGTCGT GTGCAGGTCAAATCCAAAGACCCGCGCGAGTACCCGAGCATCCTGTTCAACTACATGGCCAGCGAGCAGGACTGGCAGGAGTTCCGTGACGGCATCCGCC TGACTCGCGAGATCATGCAGCAACCGGCACTGGACCCGTACCGTGGCCGCGAAATCAGCCCCGGCATCGACGTGCAGTCCGACGAGGCGCTGGATCAGTT CGTGCGTGAGCATGCCGAAACGGCTTATCACCCGTCCTGCTCGTGCAAGATGGGCACCGACGAGATGTCGGTTGTTGATGGACAGGGTCGCGTGCATGGC CTGCAAAGCCTGCGCGTGGTCGATGCCTCGATCATGCCGATCATCACCACCGGTAACCTGAACGCACCGACGATCATGATCGCCGAGAAAATCGCCGACA AGATCCGTGGTCGCCAGCCGCTGCCACGCAGTACTGCCGACTACTTCGTCGCAGGCGACAAGCCGGCACGCGGCAAGCCGCTGCGCGAGATCAGCCACCA GGGTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCCGACGACCAGGCGTCCTCCCGGGACGCCTTTCGTTGTGCATGCTCCAGCGTGGAATGTATTTCACACTGGAGCATTGGCACGATAGTTACGAGATTCT CGTTCCTCACGCTCCAGCAATGCATTTTCCTACGCTCCGCGTCGCAATGGGCGCGGAGCATAGTTACGAGCGCCGACTCGATTCAGACCCTTCTCCCGAC AGACGCGAATTGCCACTACCCCTCCGCTCTGCCACAATCGCGAATGATTCTCTTTAGTTAGAACTTTCTCATCGAGGCCATTCGTGTCGTCAGTCCCAAG CACTCATAGCGAGATCGTTGGTGCGCTGTATCGCGATCATCGCGGCTGGCTGCTGGCCTGGCTCAGACGCAATGTCGCCTGCCCGCAACGTGCTCAGGAT TTGAGTCAGGACACGTTCTTGCGTTTGCTGGGGCGCCATGAATTGCTTGCGCCCAGAGAGCCGCGTGCTTTCCTGGCAACCGTCGCCAAAGGGTTGATGT
|
|
| Amino Acid Sequence |
>choline dehydrogenase
MTTQSEYDYIIIGAGSAGNTLAARLTEDAGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYNWAYETEPEPHMNNRRMECGRGKGLGGSSLINGMCY IRGNAMDYDGWAKEPGLEDWSYLDCLPYFRKAETRDIGPNDYHGGEGPVSVATPKAGNNPLFHAMVEAGVQAGFPRTDDLNGYQQEGFGPMDRTVTPNGR RASTARGYLDEAKKRSTLTIVTHALTDRILFEGKRAVGVAYLVGDSDTRIQARARKEVLLCGGAIASPQILQRSGVGPAEVLNKLDIPVVHDLPGVGQNL QDHLEMYLQYACTQPVSLYPSLKWWNQPAIGAEWMFLGTGIGASNQFEAGGFIRSSEAFEWPNIQYHFLPVAINYNGTKGVQEHGFQAHVGSMRSPSRGR VQVKSKDPREYPSILFNYMASEQDWQEFRDGIRLTREIMQQPALDPYRGREISPGIDVQSDEALDQFVREHAETAYHPSCSCKMGTDEMSVVDGQGRVHG LQSLRVVDASIMPIITTGNLNAPTIMIAEKIADKIRGRQPLPRSTADYFVAGDKPARGKPLREISHQG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|