Pseudomonas syringae pv. syringae 41a, PSS41A_RS12055

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas syringae pv. syringae strain 41a 41A03, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GTTAGCCAGGGAGGCAACATGAGTAGTCAACACAAGCTGTTGCCTTCATTGCTGGATCGATTGCTCGACGATCGTCCACATCAATCCGTGGAATCGTCAT CGCAACGGTTGAGCTCGCTGGCCGATTACAAGGCCAGCATCGTTCGTGACCTGGAGATTCTGGTGAACACTCGCCAGTCTCTGGTCGCTGGCGAGCTGGA AGGTTTCGCTAATCTGAGCGGCACCATCCTCGACTACGGTATGCCCGACTTCACCAGTAGAAGCGTGCTCGACCCACAGGATCGTCTTTTGATCCAGCGC CAGCTGGAAAAGGCCATCTCGGTGGGCGACCGACGCTTTCGCAGCGTGAAAGTCCAGTTGCTTGCACAACAGACCGGCCAACGCATGCTGACTTTTCGTG TGGACGCAGTACTGCGTCTGCAGGACATTTCGCGTCAGGTTTCTTTTGACGCCGTGCTGCAGGTCAACACTCAGGAATACAAAGTGCAGAACCTCAACTG
DNA Sequence for Gene
>PSS41A_RS12055
ATGCTCGACGATCTGCTGCCCTATTACGAGAAGGAACTCTCGCACCTGCGCTTTCTGGGCCAGGAATTTGCCGCTCAATATCCGAAGATCGCTTCGCGAC TGCTGATTGAGGGCGACAACTGCGAGGACCCGCACACCGAGCGCCTGATCGAGGCGTTCTCGTTCCTGTCGGCGCGCGTGCACAAGAAGCTCGATGATGA GTTTCCGGAAATCGTCGAGTCGTTCCTCGAGGTGCTGTACCCGCATTACCTGCGCCCTACCCCGTCGATGTCCATCGTCGAGTTCAACATGGGCAAGCAG GAAAAGGTCACCGAGTCCTATCGTGTGGCGCGACACACCGAACTGCACGCCAATCCGGTGGACGGCATCGTGTGCAAGTTCCGGACGTGCTACCCGGTCG AGTTATGGCCGATTGCCGTGCAGAGCGCGTCGTTCATCGAAATGGAACGCTCGGCGTTCAACGGCCACAGCGCAGACCTGATTGCACGTCTGCGCATTGG TCTGACGGCCACCTCCGACGTATTGTTCGGCAAGATGGAAATGGATAGCCTGCGCTTCTTCCTTGATGGCGAAAGCACGCTCATGCATCAACTGTATGAG CTGCTGTTCAACAACCTGGCCAAAGCCACGCTGTCCTTCGAAGACGAAGGCCGCACTCGCGAAGTGGTGCTGCCAGCCGGTGCCTTGAAATCTGTCGGTT ACGGTCTGGATGAAGGGCTGGTGGATTACTCGGAGCGTTCGTTTCTGGGTTATCGGTTGCTGCACGAGTACTTCACCTTCCCGGACAAGTTCATGTTCTT CGACCTGTCGGGCTTTGCGCGCATTCTGGCGGGCAAAGAGATCGGCAAAGTGGAGATCAATTTCTACTTTTCCGACTACGACCTGACAGACCGTCTGGCA CGCCTGACGCAGAACGTCAGCCGCAACAATTTCAAGCTCAACTGCACGCCGATCATCAACCTGTTCCGCCAGCAGGCCGAGCCGATCAAGCTGACCCACG TCCAGCATGAATACGCTGTCACGCCGGATGTGCGCCTGCAAAGCTCCGCCGAAGTGGTTTCGATCGATCGCGTGCGGCGGGTGAAGAAGATCAATGGCAA TGATCAGGTCGGCACCTGCCACCCGTTCTTCGAACCACGCGGCGATCAAGGCCCGGGGCAGAGTTTCTGGATCGCTCGGCGCCGCCCTACGCAGAGCCGG CAAAGCGATGGCTCGAACATGTTCATCCGCGTCGTGGATCGGGATCTGGAGCTGATCGATTCCAACAACGACACGCTCAGTATCCGTCTGACGTGCAGCA ATCGCGACCTGCCATTGATGCTGCCTTTTGGCGGCGAGCGCGGCGATTTCAATATTCCGTCGAACTCGGTGATCAAGGACATCCGCTGCCTGCGCAAGCC GACGGCGACGGTGCGCGTGCCGCTGGGCAACGGCGTGATCTGGCGGCTTATTTCGCACCTGTCACTCAACCACATGTCGCTGGTTTCCAAGGGGCGCGAG GTGCTGCTGGAACTGCTGTCGCTTTACAACTACCGCAACGTGTCGGCGATCCGCAAACAGATCAACGGGATCGTTTCGGTGAGCAGCGAGCCGGTCGTGG CACGCATCGGCCATCCGCGGCCGAACTTCGTGCGCGGCGTCGGCATCACGCTAAAGTTCGATGAAAGCCAGTACACCGGCAGCGGCGTGTTCCTGTTCGG CATGGTGCTTGATCACTTCTTTGGTCAGTACTGCTCGATGAACAGCTTTACCCAATTAACCCTTCGCACCTTGCAGCGCGAAAAGAGAGTGGTCCAATGG CCCCCGCGAACAGGCGATCAACCCCTGGTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCGACCAGGCAAGGGCTGAGCCGCACCGATTCGAATTTTTCCAGTTGGTGCGTTTGCTTCGCCTGCACTACAGCAGGAACGGGCGTATGGACCTGGAAAC CAGGCCGCACGAAGACCCTCTGCGCTTTCGTTCGCAGCTGTCGCTGAACTTCCCGGCCAGTGAAGTCAGCGACCTGCAGTTCGAACGCGAAGGCAAGCTC TCGGCGGCAGGTTTGCCGCTGTCCGAAGTGCAGGTCACGTTCATGGGCCTGGTCGGTCCTTCGGGCGTGCTGCCGCGCCCGTACACCGAGCTATTGATCG ACCGACATATTCAGTATCGAGACGACGCTGCACATGCGTTTCTGGATATTTTTTCGCATCGCATGACCACGCTGTTTTACGAGGCGTGGCAGAAGTACAA GTTTTACATCGAGTACGAGCGCAACGGCACCTCGAACTTCGACCGTTATCTGCTCAACCTGGTGGGGTTCGGTCCAGAAGGCCTGAAACAGAAATTCGAC
Amino Acid Sequence
>hypothetical protein
MLDDLLPYYEKELSHLRFLGQEFAAQYPKIASRLLIEGDNCEDPHTERLIEAFSFLSARVHKKLDDEFPEIVESFLEVLYPHYLRPTPSMSIVEFNMGKQ EKVTESYRVARHTELHANPVDGIVCKFRTCYPVELWPIAVQSASFIEMERSAFNGHSADLIARLRIGLTATSDVLFGKMEMDSLRFFLDGESTLMHQLYE LLFNNLAKATLSFEDEGRTREVVLPAGALKSVGYGLDEGLVDYSERSFLGYRLLHEYFTFPDKFMFFDLSGFARILAGKEIGKVEINFYFSDYDLTDRLA RLTQNVSRNNFKLNCTPIINLFRQQAEPIKLTHVQHEYAVTPDVRLQSSAEVVSIDRVRRVKKINGNDQVGTCHPFFEPRGDQGPGQSFWIARRRPTQSR QSDGSNMFIRVVDRDLELIDSNNDTLSIRLTCSNRDLPLMLPFGGERGDFNIPSNSVIKDIRCLRKPTATVRVPLGNGVIWRLISHLSLNHMSLVSKGRE VLLELLSLYNYRNVSAIRKQINGIVSVSSEPVVARIGHPRPNFVRGVGITLKFDESQYTGSGVFLFGMVLDHFFGQYCSMNSFTQLTLRTLQREKRVVQW PPRTGDQPLV
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site