Pseudomonas syringae pv. syringae 41a, PSS41A_RS11160
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae strain 41a 41A03, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCGGGCTGATGCAGCCGTGGCGCTTCATCCGCATCAGCGACCCGTTATTGCGCGGCAGGATGCAGGCGCAGGTAGAGGAAGAGCGTATCCGTACCGCCG AGGCGCTGGGTGAGCGAACCGACGAGTTCATGAAGCTCAAGGTCGAAGGCATCAACGACTGTGCAGAAGTGCTGGTCGCCGCGCTGATGGAAGGGCGAGA GCAGCACATTTTCGGCCGTCGCACCTTGCCGGAAATGGACATGGCCTCGCTGTCCTGCGCGATCCAGAACCTGTGGCTGGCCTCGCGTGCAGAAGGCTTG GGCATGGGCTGGGTGTCGCTGTTCGACCCCGAGGCGCTGGCCGAACTGCTGGGCATGCCTGACGGCGCCAAGCCGCTGGCGATCATTTGTCTGGGCCCGG TCAAGGAATTTTATCCTGCGCCAATGCTGGTGATGGAAGGCTGGGCGCAGGCGCGTCCGCTGCATGAGCTGCTGTACGAGAATCAATGGGGAGTGAGTCA
|
|
| DNA Sequence for Gene |
>PSS41A_RS11160
ATGAGTGTGGCGCTGTTGAGCGTCGCCGGAGTCGCGCTGGATGCGCTGCTCGGTGAGCCAAAACGATGGCATCCGCTAGTGGCGTTCGGCAACTTCGCCA GTCGGGTCGAGCAGCGCTTCAACAGTGGCGGCCGTGGCTGGCGCAGTCATGGCGTTACTGCCTGGGTCATCACCGTTGTACCGCTGACGCTGCTGGCCAC GCTGCTGAGCTGGTTGCCTGGCGTGGGCTGGCTGTTCGATATTCTGGCGCTGTATTGCGCGCTGGGCATGCGCAGCCTGGGTGAGCACGTTCAGCCGGTG GCGCAAGCGCTGCGCAGTGATGATCTGGTCGAAGCACGTCAGCGAGTCGGTTATCTGGTCAGTCGCCAGACCACTGAGCTGGACGCTACCGAAGTCGCCC GCGCAGCCACCGAGTCGGTGCTGGAGAACGGCAGCGATGCGGTGTTCGCGGCGCTGTTCTGGTTCGTGGTGGCTGGCGCGCCCGGCGTGGTGCTGTACCG GCTGAGCAATACGCTGGACGCCATGTGGGGTTACCGCAATGAGCGCTTTGAGCGTTTTGGCTGGGCTGCGGCGAAGATCGATGATCTGCTCAACTATATT CCCGCACGTCTTGTGGCATTGACCTACGCCTTGCTGGGCAAGACCCGACTGGCGCTGCGTTGCTGGCGTACGCAGGCTCCGGCATGGGACAGTCCGAATG CCGGCCCGGTAATGGCCGCTGGCGCAGGCGCGCTGGGCGTCGAACTGGGCGGCGCGGCGATCTACCACGGCGAGCTGCATCAGCGTCCGCAACTGGGTGA GGGTACGCCTGCCGATGCGGACTCGATCGATCGCGGCTGGCAACTGGTGCAGCGCGGCGTCTGGTTATGGCTGCTGGTCATCTGCGTGGCAGCTGAATTT TATGCTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCACGGCGGCCGGTTGCGCGCGGCGGCGCAGCATTACGGTATCCCTCTGGCCGACTGGCTGGACCTGTCCACCGGGATCGCGCCCTGGTCGTGGCTCATC CCGGAGATTCCGACGCGTGCCTGGGCGCGGTTGCCCGAGACTGACGATGGTCTGGAAGCGGCGGCCTGCACTTATTACGGCGTGTCCCGGTTATTGCCGG TGTCCGGTTCGCAGGCTGCGATTCAGGCGCTGCCACGGGTGCGCAGCGGAGGGAGGGTTGGCGTACTGTCGCCCTGCTACGCAGAGCACGCGCATGCCTG GCGCAAGAACGGCTTCGTGGTCCGTGAGGTGGGTGAGCAGGAGGTCGACTACTTCCTCGACAGCCTGGACGTGCTGGTGGTGGTCAACCCCAACAACCCG ACCGGCCTGCACCTGAGCGCCGAGCGCCTGCTGGAGTGGCATGCGCGACTGGCCGAGCGCGGTGGCTGGCTGGTCGTCGATGAAGCGTTCATGGATAACA
|
|
| Amino Acid Sequence |
>cobalamin biosynthesis protein
MSVALLSVAGVALDALLGEPKRWHPLVAFGNFASRVEQRFNSGGRGWRSHGVTAWVITVVPLTLLATLLSWLPGVGWLFDILALYCALGMRSLGEHVQPV AQALRSDDLVEARQRVGYLVSRQTTELDATEVARAATESVLENGSDAVFAALFWFVVAGAPGVVLYRLSNTLDAMWGYRNERFERFGWAAAKIDDLLNYI PARLVALTYALLGKTRLALRCWRTQAPAWDSPNAGPVMAAGAGALGVELGGAAIYHGELHQRPQLGEGTPADADSIDRGWQLVQRGVWLWLLVICVAAEF YA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|