Pseudomonas syringae pv. syringae 41a, PSS41A_RS10990
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae strain 41a 41A03, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGAAGAACATCGGCCCCAGCGGCATCGTGGTGGTGATCATTCGCGAAGACTTGCTGGGTCGTGCGCGCTCGCTGTGCCCGACCATGCTCGACTACAAAG TCGCGGCCGACAATGGTTCGATGTACAACACGCCGCCGACCCTGGCCTGGTACCTGTCCGGGCTGGTCTTCGAATGGCTGAAAGAGCAGGGCGGTGTCGA AGCGATCGGCAAGCGCAACGAAATCAAGCAGCGCACGCTGTATGACTTCATCGACGCCAGCGAGCTGTACAGCAACCCGATCAACAAGCCTGATCGTTCG TGGATGAACGTCCCGTTCCGCCTGGCTGACGATCGTCTCGACAAGCCGTTCCTGGCCGGTGCCGATGCAAACGGCCTGCTTAACCTCAAGGGCCATCGCT CGGTGGGAGGCATGCGTGCATCCATCTACAACGCAATCGATATCAACGCCATCAACGCGCTGGTGGCCTACATGAAAGACTTCGAGAAGGAGCACGGCTG
|
|
| DNA Sequence for Gene |
>PSS41A_RS10990
ATGTCCGAGCAAGAACTCAAGGCGCTTCGCGTCCGTATCGACAGCCTCGATGAAAAGGTTCTGGAACTGATCAGCGAGCGTGCCCGCTGTGCCCAGGAGG TGGCCAGGGTCAAGATGTCCTCGCTGGCTGAAGGCGAGGTGCCGGTGTTCTATCGGCCGGAGCGCGAAGCTGCGGTGCTCAGGCGAGTCATGGAGCGTAA TCGCGGGCCGTTGAGCAACGAAGAAATGGCGCGTCTGTTCCGCGAAATCATGTCTTCCTGCCTGGCGCTGGAACAGCCGCTCAAGGTCGCCTATCTTGGC CCTGAGGGGACGTTTACCCAGGCCGCCGCGATGAAGCATTTCGGGCACGCCGTCATCAGTCTGCCGATGGCTGCAATTGACGAAGTGTTCCGCGAAGTGG TCGCCGGTGCCGTGAATTTCGGCGTGGTTCCGGTGGAAAATTCCACCGAAGGCGCGGTCAATCACACCCTCGACAGCTTTCTTGAACACGACATGGTGAT CTGCGGCGAAGTCGAACTGCGCATTCACCACCATCTGCTGGTGGGCGAAAGCACCAAGACGGAAAGCATCACGCGCATTTATTCCCATGCCCAGTCGCTG GCTCAGTGCCGTAAATGGCTGGATGCCCATTACCCGAATGTCGAGCGCGTCGCCGTTGCCAGCAACGCCGAAGCTGCCAAACGGGTAAAGGGCGAGTGGA ACTCGGCGGCCATCGCCGGCGATATGGCGGCAGGTCTGTATGGCCTGACCCGACTGGCGGAAAAGATCGAAGATCGTCCGGACAATTCCACGCGTTTTCT CATTATCGGCAATCAGGAAGTCCCGCCGACCGGCGATGACAAAACCTCGATCATTGTGTCGATGAGCAACAAGCCGGGCGCGCTGCACGAGCTGCTGGTG CCGTTTCACGAGAATGGCCTGGACCTGACGCGTATCGAGACCCGTCCTTCGCGCAGTGGCAAGTGGACCTACGTGTTCTTCATTGACTTCGTCGGCCATC ACAAGGATCCGCTGGTCAAGGCCGTGCTGGAGCGAATCAGCAGCGAAGCCGTCGCCTTGAAGGTGCTGGGTTCCTACCCGAAAGCGGTGCTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGGTGTGGTCCATGATTCGTTTGTTTTTTACCTTGCCGGGTTGTCAGGTGTGTTCGCGTGGTTGATGTGATTGCAGAACAGTCAGTACGGCCGGTGATCG GTCGTCTGGTGGTCGTCGGGCTCGGGCTGATCGGTGGTTCCTTTGCCAAGGGTGTGCGCGAAAGCGGCCTGTGTGGCGAAGTGGTCGGCGTCGACCTCGA TCCGCAGTCGCGACAGCTGGCGGTCGAGCTGGGGGTCGTGGACCGTAGTGAGGCTGACCTTGCCACCGCTTGCCGTGGTGCGGACGTGATCCAGCTGGCG GTGCCGATACTGGCCATGGAAAAGCTGCTTGCGCTGCTGGCGCCGATCGATCTGGGTCATGCAATCCTGACCGATGTCGGCAGCGCCAAAGGCAATGTGG TGAGGGCTGCACGTCAGGCGTTCGGGCACATGCCGTCGCGCTTCGTTCCCGGCCATCCGATTGCAGGCTCCGAGCAGAGCGGTGTCGAGGCGTCCAATGC
|
|
| Amino Acid Sequence |
>chorismate mutase
MSEQELKALRVRIDSLDEKVLELISERARCAQEVARVKMSSLAEGEVPVFYRPEREAAVLRRVMERNRGPLSNEEMARLFREIMSSCLALEQPLKVAYLG PEGTFTQAAAMKHFGHAVISLPMAAIDEVFREVVAGAVNFGVVPVENSTEGAVNHTLDSFLEHDMVICGEVELRIHHHLLVGESTKTESITRIYSHAQSL AQCRKWLDAHYPNVERVAVASNAEAAKRVKGEWNSAAIAGDMAAGLYGLTRLAEKIEDRPDNSTRFLIIGNQEVPPTGDDKTSIIVSMSNKPGALHELLV PFHENGLDLTRIETRPSRSGKWTYVFFIDFVGHHKDPLVKAVLERISSEAVALKVLGSYPKAVL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|