Pseudomonas syringae CC1557, N018_RS24725

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas syringae CC1557, complete sequence. [Details]
DNA Sequence Upstream of Gene
TGCTCTTATATTAGTCGACCCATTGAACTTAATATTCAAGGCAGAGTTAGCGAGAAAGAATACTTCTTTTTTGTTGCTTCCGACAGAATAAATGCAATGG ATTTAGATATGTCGACATTCATACTTGACACCAACCCTAAAATTGACGCCTCAATGTCTAATACACCGGTATACGAGCGTATTGAAAAACTGGTAGTACT GAAAAATATAAAATCAGATTTGTTTTACTTCGAAGAGATACACGAAGTAGTCTGCTCTAGTGAATTTCGAGATACATATATAGAAGAAGGTTTATTCGGC CTATCCTTTAAAAAAATAGATGAAAATTATGAATATGCCCCTTGGGATGATTTTTAAAATCTTGAGATTCGATATTTAATTTTTCAAGAAAATATTTTCG CCCACAGCTCTTTTAAAAATTACTTATCAAGGTAGCTGCCAACTTTGCCTCAGCTACCTATTAATATCTTTTATAATGCTTACTTAAGTGTCCCTATCTA
DNA Sequence for Gene
>N018_RS24725
ACCGATGTCGTGATGACCCGCCACAGCAACGCACTGGGCCTGACCTGTGAGTACCGTTGGGAAACCATCGACGGCCAGCCGCGCGTTGTCGAGCACCAGA CCAGCGATGGCGAGCATTTCCACTTCCGCTACGACCGCGAGGCGCGCACCACGTGGGTCACCGATGTACTGGGACGCGAGCTGGAGATTCACTACAACAA GGACCACCGCGTTACCTCAAGCCGCGACTATGGAGGTGATCACTACGCCATCGAGCTGGACGACACCGGCAACATGACCGGCCTGACCCTGCCCGACGGC AATAAATTGTTCTTCGAGTACGACGAGTTCGCCCGGCTGCTCAAGGAAACCGACCCGCTGGGGCGCAGCATTCGTTACCAGTATCACCACCTGACCACGC TGATCACCCAGGTCGATTACCCCGACGGCAGCATCTGGAAGGCCCGCTACGATTCCAAAGGCAACCTTGTCGCCGAAATCGACGCACTGGGACACAAGAC CGAGTACCTCAACGGCGACGATGGCCTGCCCCACACCATCGTCGACCCGACGCTCAAGTCTAAATACCTGTGGTGGAATACCTTGGCGCAGGTCCAGCGC TTTCAGGACTGTTCGGGCAAAAGCACCTTTTACCGCTATGACGAGCGCCACCATCTGGTGGCCGTCACCGATGCCCTGAACAACACCACTACGCTGGAGC GCAAACCCGACGGCGAAGTGCTGCGCATCAATCATCCGGACGGCACTAGCGAAACCTTTACTTACAACGAACTGGGCCAAGTGCTGACCCACACCGACGG CAAGGGCCAGACCACCCAACTGCTGCGCAACGGCCGGGGCCTGCCCAAGTGGCGACAGGATGCCAAAGGGCAGACCATCACCTACGAGTACGACAAGGCC ATTCGCCTCGTCGCCCTGACCAACGAAAACAACGCCACCTACAACTTTTCCTACGACAACGCTGACCGTCTGATCGAAGAAAAACGCATCGACAACCTGA CTCGCCGTTTCAGCTACAACCTTGGCGGGCACCTGACACAGGTCGAGGAAATCGGCTACGGCGAGAAAGGCGAACAGCCACGGCGCAGCACCCATCTGGA GCGCGACCCGATAGGTCGCCTGTTGGCCAAACTAAACGACGACGCGCGTCAGGACTATGCCTACGACGACGGAGACCGACTTCTGTCAATCGAGCGCAAA CCGACGGACACCGGCAGAAAACTCGGCGTCGCCGCTGAAAAGATCGACTTCGCCTACGACCTGCTGGGCCGCCTCGTCAAAGAGACCACCCCGCAAGGCG CGCTGGCCTACGAGTACGATCCACTCAGCAACCTGACCACGCTGAGCCTTCCGACCGGCCAGCACCTGAACCACCTGTATTACGGCAGTGGTCACCTGCA TCAGTTGAACCTCGATGGCCAACTGATCAGCGACATGGAACGCGATGACCTGCACCGCGAGATCTATCGCACCCAAGGCACGCTGACCAGTTGCTTCGGC TACGACAGCATGGGCCGCAAGGCCTGGCAGTACGCCACAACCCTGCCCGCTGAAAAGCTGTCGCAGATCCAGAACCCGCTCATAAAGCCAGAGCGCTACG TCGAACACGCCTACAACCCGATCCATCGTCGTTACGAGTACGACCCGGCCGGCGAACTGAGTCGCACCCTCGACAAACTGCGCGGCGAAACCCGGTACGA GTACGAAGCCAACGGCCAGTTGCTGGCGCGCAACACCGGCCGCGTGGTCGACGGCGAAGAGTTCCGTTACGACGCCGCCGCCAACCGCCTCAACTTCAAC ACCAGCCGCTTTGATCACGTAAAAGACAACCGCCTGAAACAATGGGCGAACCAGGAATACAAATACGACGCCTGGGGCAACCTGATAGAGAAAACCGTCG GCATCGTGCGCTGGCAAACCTTCACCTACGACTGCGAAAACCGCCTGGTCAGAACCGAAACCATGGCCAACACACAGGTGGAAAGCACCAGCAGCTATCA GTACGACAGTCTGGGTCGAAGAGTTGCCAAGCAGTCCGAGATCAAAGGCCACACCGACCACAAACGCTTCCTCTGGCAAGGCCTGCGGATGCTGCGTGAG GAAAGTCCGGGACAGAGTAGCCTGTATCTCTACGAGCCCGGCAGCTATGCGCCGCTGGCCCGTGTGGATCAGAAAGAAGGCGAGGTAGAGAACAAGGTTT ACTACTTCCACACCGACCAGATCGGCACACCGCTGGAGATGACCGATGCTGAAGGGCAGATCGTCTGGCAGGCGAAGTACCGGGCGTGGGGGGCTGTTGA AAAGCTGGTGGTGAACGAGGTTGAGCAGAACCTGAGGTTTCAGGGGCAGTATTTTGATGTCGAGACGGGGCTGCACTACAACACGTTTAGGTATTATGAC CCGGAGATTGGGCGGTTTACTACGCAGGATCCGATTGGGTTGCTGGGTGGGCTTAATCTTTATCAATATGCTCCGAGTGCAATCGGCTGGATTGATCCGC AAGGTTTAGCTACGCTTTTTGAATTAGGTACCTATGGAGGACTTAACGGATCAACTCACATTGGAGATGGTTTGCAAGCGCACGAACTCCTCCGTCACGA ATATCTCGTCCAGCAGAATCTCGCGGAGAAGAGTACTAGGCTTCCAGGAAATCCATCTATTGCGCTGGATCTAGATCATCACACTAGAGGCCCAATGAAA GATACAAGAGGTATTGGTGGTGCTCATTGGCATGAGACGCAAATACGTGAGAGCCAAGGTTTGGGTAGGAATGAATTTGCATCATCTGTAAAGCGTGAGC TAGACATCACATCAGGCGCGCTAAGGAAGAGTGGAGTTCCTAAGTCTAGAGTAAAAGAATTAAGAAGAATGGCCAAGAAATTTCATAGCAGTCTTAATGG GTGTGGGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCAAACATGGTTCTTGTTAAAGAAATTATTTTATCGGACAACGTTGAGCATTCTAGCGTTATCATAGGTGGCGGCTCAGCAAGGTTAAATGCTTGGCCGG CTAATCCCGACGGAAAAAGCCTTGTGTTAATTGCCACTATAGAGTGCGCTAACCTCAAAAAATATTCTGGTTTCAACTCGATTCCCGAGGAAGGTGTACT GTATGTCTTTTCAACTTACAGTCGCTCTGATTATTTTCTCGATAACGTTACGTACAGTGGCGATACGTCTGAGCTAGAGCTGATACTGAGTGGCTACACC TTAGTAATTATGGGGAATTCTGATTCTGAAATAGTTAGTCCGACTGAATCAGTTCCGAAAGTACACACAGACTTTAAAGAAAGAGAAGTTGGGAATGACG AGTACCCAGTATTCTCAATGCTTACGAACACCCCACCTAATGGAGTAGCTTTACCTCCAGAGTTGCAGGAAGAGTACGAGTTTGTGATGCAGCTATACTC
Amino Acid Sequence
>type IV secretion protein Rhs
TDVVMTRHSNALGLTCEYRWETIDGQPRVVEHQTSDGEHFHFRYDREARTTWVTDVLGRELEIHYNKDHRVTSSRDYGGDHYAIELDDTGNMTGLTLPDG NKLFFEYDEFARLLKETDPLGRSIRYQYHHLTTLITQVDYPDGSIWKARYDSKGNLVAEIDALGHKTEYLNGDDGLPHTIVDPTLKSKYLWWNTLAQVQR FQDCSGKSTFYRYDERHHLVAVTDALNNTTTLERKPDGEVLRINHPDGTSETFTYNELGQVLTHTDGKGQTTQLLRNGRGLPKWRQDAKGQTITYEYDKA IRLVALTNENNATYNFSYDNADRLIEEKRIDNLTRRFSYNLGGHLTQVEEIGYGEKGEQPRRSTHLERDPIGRLLAKLNDDARQDYAYDDGDRLLSIERK PTDTGRKLGVAAEKIDFAYDLLGRLVKETTPQGALAYEYDPLSNLTTLSLPTGQHLNHLYYGSGHLHQLNLDGQLISDMERDDLHREIYRTQGTLTSCFG YDSMGRKAWQYATTLPAEKLSQIQNPLIKPERYVEHAYNPIHRRYEYDPAGELSRTLDKLRGETRYEYEANGQLLARNTGRVVDGEEFRYDAAANRLNFN TSRFDHVKDNRLKQWANQEYKYDAWGNLIEKTVGIVRWQTFTYDCENRLVRTETMANTQVESTSSYQYDSLGRRVAKQSEIKGHTDHKRFLWQGLRMLRE ESPGQSSLYLYEPGSYAPLARVDQKEGEVENKVYYFHTDQIGTPLEMTDAEGQIVWQAKYRAWGAVEKLVVNEVEQNLRFQGQYFDVETGLHYNTFRYYD PEIGRFTTQDPIGLLGGLNLYQYAPSAIGWIDPQGLATLFELGTYGGLNGSTHIGDGLQAHELLRHEYLVQQNLAEKSTRLPGNPSIALDLDHHTRGPMK DTRGIGGAHWHETQIRESQGLGRNEFASSVKRELDITSGALRKSGVPKSRVKELRRMAKKFHSSLNGCG
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site