Pseudomonas syringae CC1557, N018_RS18980
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae CC1557, complete sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGGTGAACGGCGAGCGTGCCGTGCACGGTGTGGGCATCGATGAAAACATCACTACAGCAAGCTTCCGGGCGCTGTTCAGTGCACTGAACCGCTCGCTGA GCCAGGCACAGGCCAAAGCGGCCTGAGTCGACAGTGAGGCTGGCGGACTCAGGTCCGTCAGCCTGCTGCTAAAACCGGCTTTCACTCTTTAGCCCCTCCC ACTACCCCTCTCGCAAGCCTCTTTCAGTCTGTGCATGGCCCTGCCCGTTTCGGCATAATCTTTTTCATTTATGCTGTGGTAGCATGCTGCCTTTAATCCG GACTGGTAATAATCCAACAGCCATTCATAGGCTGACGATGCCAGGCCGGAATTACCTGCCAGCTGTGTCTTTCCTATAAAACCAAGACGACTATTGCATT GAATTCCGGACGACAAGAATGCTCGGGCAGATTCACCGTGCATTGAAATTACTATCGGCCTCGGTAATGCTGAGCTGATCCAATCACATTTGGAGCGATT
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| DNA Sequence for Gene |
>N018_RS18980
ATGCCCAAGGCTTCCCATCAAGATCTGCGCCGCAGCTTCCGCGCCCTTACCTCGTCGAACTCCTGCTTCCATACCGCCTCGGTCTTCGACCCTATGTCAG CCCGCATCGCAGCGGACCTGGGCTTTGAAGTAGGCATCCTCGGAGGCTCGGTCGCCTCTCTGCAAGTGCTGGCTGCGCCTGACTTCGCGCTTATCACCCT CAGTGAATTCGTTGAACAGGCGACGCGGATCGGTCGCGTCGCACAGTTACCGGTGATTGCGGACGCCGACCATGGTTATGGCAATGCCCTTAACGTCATG CGCACCGTTGTTGAGCTGGAACGAGCAGGTATTTCTGCACTGACCATCGAAGATACCCTGCTGCCTGCGCAGTTCGGACGCAAATCCACCGACCTGATTT CCACGGCTGAAGGCGTCGGCAAGATTCGCGCAGCACTGGAAGCGCGTGTCGATCCAGAGATGTCGATTTTTGCCCGTACCAATGCGGCGATCATTCCGGT ACAGGAAGCCATCAGCCGAGTTCAGCAGTATCAGGCTGCCGGGGCTGACGGTATTACCATCGTGGGTATTCGTGACTTTGATCACCTGGCGCAGGTATCA GAGGGCCTGACCGTGCCGCTGATGCTGGTGACCTATGGCAATCCGGAACTGCACGACAATGCGCGCCTTGCCGAAATGGGCGTGCGAGTCTGCGTGCATG GCCACGCTGCCTACTTCGCGGCGATCAAGGCCACCTATGACTGCCTGCGCGAACAGCGCCAGATACTCGGCAGCGAGTCGAACATGAGCGCTACCGAACT GACCCACACCTATACCCAGCCTGAAGACTATGTCGAGTGGGCACGCAAGTTCATGAACGTGAACGAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAGGCAATGCTGGACGCGGCGCCGCCTGATCAGGAGCGGACGCAGAGCGTCTGCAACTGAATGCCCACGCAGCAACGTGCGTGGACATGATGAGCGTCAC TTCGGACGCCGGGCAGGCGATATCACGCGGTGGTGTTTACACCGCCGCCGGTTTCCAGCTGCAACAACGATGCCTGCAACGTCTGCAGGTTGGCGCTGAT GACGGATATCTGGCCCTGAATTGCCATGGATTTCTGAGCCTTTTCTTCCGCTGAGCCGTTACCGCTTTGGGCGGCAGCCAACTGCGCCTTCTGCTCGACG AGTTGCTTCTGAACATCCTTGATCTGCTGCTTTATCTGTTCGACGGTCTGATTGAGAGACGCTTCGCTGGAACCACCAACGCTGCCGCCGCCACCCGCCG CACCGGCCTTGCCATCGTCAGTTGACGCCTGATCAGAGCTTTTCTCTGTTTCAGTAGTCGTGGTCGCAGCAGCAGTAGCGGCCTTGGTTGTTTCAGCGTC
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| Amino Acid Sequence |
>oxaloacetate decarboxylase
MPKASHQDLRRSFRALTSSNSCFHTASVFDPMSARIAADLGFEVGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVAQLPVIADADHGYGNALNVM RTVVELERAGISALTIEDTLLPAQFGRKSTDLISTAEGVGKIRAALEARVDPEMSIFARTNAAIIPVQEAISRVQQYQAAGADGITIVGIRDFDHLAQVS EGLTVPLMLVTYGNPELHDNARLAEMGVRVCVHGHAAYFAAIKATYDCLREQRQILGSESNMSATELTHTYTQPEDYVEWARKFMNVNE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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