Pseudomonas syringae CC1557, N018_RS16595

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00383
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00383
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00383
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psyr02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00486 Transcriptional regulatory protein, C terminal IPR001867 OmpR/PhoB-type DNA-binding domain 145 218 1.6E-24
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 3 111 1.9E-26
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 119 221 7.1E-29
Gene3D G3DSA:3.40.50.2300 - - - 1 79 2.0E-18
CDD cd00383 trans_reg_C IPR001867 OmpR/PhoB-type DNA-binding domain 131 218 2.48811E-30
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1 172 5.43E-39
SMART SM00862 Trans_reg_C_3 IPR001867 OmpR/PhoB-type DNA-binding domain 144 219 3.0E-22
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 1 111 7.9E-41
NCBIfam TIGR01387 JCVI: heavy metal response regulator transcription factor IPR006291 Transcriptional regulatory protein CusR-like, heavy metal response 3 218 3.8E-101
CDD cd19935 REC_OmpR_CusR-like - - 3 101 1.16359E-56
Gene3D G3DSA:6.10.250.690 - - - 80 118 1.9E-18
FunFam G3DSA:1.10.10.10:FF:000005 Two-component system response regulator - - 120 222 3.7E-36
FunFam G3DSA:3.40.50.2300:FF:000001 DNA-binding response regulator PhoB - - 1 79 1.2E-25
PANTHER PTHR48111 REGULATOR OF RPOS IPR039420 Transcriptional regulatory protein WalR-like 1 217 9.8E-58

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.