Pseudomonas syringae CC1557, N018_RS15910 (ligD)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01068	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003910	DNA ligase (ATP) activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01068	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006310	DNA recombination	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01068	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006281	DNA repair	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01068	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	psyr03450	Non-homologous end-joining	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF13298	DNA polymerase Ligase (LigD)	IPR014144	DNA ligase D, 3'-phosphoesterase domain	39	143	2.4E-39
CDD	cd07906	Adenylation_DNA_ligase_LigD_LigC	-	-	234	418	9.67333E-83
Gene3D	G3DSA:2.40.50.140	-	IPR012340	Nucleic acid-binding, OB-fold	419	538	3.9E-39
NCBIfam	TIGR02777	JCVI: DNA ligase D, 3'-phosphoesterase domain	IPR014144	DNA ligase D, 3'-phosphoesterase domain	6	163	4.0E-71
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	187	230	-
PANTHER	PTHR42705	BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD	-	-	223	857	4.6E-105
NCBIfam	TIGR02778	JCVI: non-homologous end-joining DNA ligase, polymerase domain	IPR014145	DNA ligase D, polymerase domain	574	816	3.7E-87
NCBIfam	TIGR02779	JCVI: non-homologous end-joining DNA ligase, ligase domain	IPR014146	DNA ligase D, ligase domain	236	536	1.7E-112
SUPERFAMILY	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain	-	-	223	417	2.11E-46
CDD	cd04862	PaeLigD_Pol_like	IPR033651	LigD polymerase domain, PaeLigD-type	589	815	0.0
Gene3D	G3DSA:3.90.920.10	DNA primase, PRIM domain	-	-	579	861	7.6E-98
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	547	580	-
SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	IPR012340	Nucleic acid-binding, OB-fold	420	539	5.48E-28
Pfam	PF01068	ATP dependent DNA ligase domain	IPR012310	DNA ligase, ATP-dependent, central	240	416	2.3E-26
Gene3D	G3DSA:3.30.1490.70	-	-	-	247	414	5.6E-46
NCBIfam	TIGR02776	JCVI: DNA ligase D	IPR014143	DNA ligase D	245	845	0.0
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	1	30	-
Gene3D	G3DSA:3.30.470.30	DNA ligase/mRNA capping enzyme	-	-	258	373	5.6E-46
Pfam	PF04679	ATP dependent DNA ligase C terminal region	IPR012309	DNA ligase, ATP-dependent, C-terminal	435	530	2.0E-25
CDD	cd07971	OBF_DNA_ligase_LigD	-	-	420	535	1.6772E-53

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.