Pseudomonas syringae CC1557, N018_RS11505

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas syringae CC1557, complete sequence. [Details]
DNA Sequence Upstream of Gene
GCCAGATGAACTTTGTCGACAACCAGGTCAACCCCAGGACCGGCACCATTCGCGGTCGTGCGGTGTTCGATAACGCGGACGGCAGCTTTACCCCTGGCCT GTACGCACGCCTGAAACTGGTGGGCAGCGGCACGTACTCGGCAGTCCTGATCAACGACGAAGCGGTCGGCACCGATCTGGGCAAGAAGTTTGTGCTGGTG ATGGATAAAGACAACAAGCCCGCCTATCGCGCCGTTGAACTGGGCCCGAAAATCGAAGGCTTGCGCATCGTGCGTAACGGGCTCGGCAAGGACGACACCA TCGTCGTCAAAGGTCTGCAGCGTGTGCGCCCCGGCCAGCCTGTGGACCCTGAAGTCACACCGATGGCCAGCGCCGAGACCCTCGCCGCACTGCTCAAACA ACGCCAGGCTCTCGACGCCAGCAACCTGCCAAAAGTGACGCCAAAACCGGCCGTCAGTATCGCCAGCGCTACTGCGCCACGCGGCTAAGGGACTCGTCCG
DNA Sequence for Gene
>N018_RS11505
ATGAACTTCTCCAAATTCTTTATCTCACGGCCGATCTTTGCCGCAGTGCTGTCGCTGCTGATCCTGATCGCCGGTGCCATCTCTCTGTTCCAGCTACCGA TCAGTGAATACCCGGAAGTGGTGCCACCGACCGTCGTGGTCCGCGCCAACTTCCCCGGTGCCAACCCGAAGGTGATCGGCGAAACCGTCGCCTCGCCGCT GGAACAGGCCATCACCGGTGTCGAAGGCATGCTCTACATGTCCTCGCAGGCCACCGCAGACGGCAAGCTGACCCTGACCATCACCTTCGCACTGGGCACT GACCTGGACAACGCGCAGGTGCAAGTACAGAACCGCGTGACCCGCAGCGAGCCAAAACTGCCCGAAGAAGTGACACGCATCGGCATCACCGTGGACAAGG CCTCCCCCGACCTGACCATGGTTGTGCACTTGACCTCGCCGGACAAACGCTACGACATGCTGTACCTGTCCAACTACGCAGTGCTCAACATCAAGGATGA GCTGGCGCGACTGGGCGGCGTCGGTGATGTGCAGTTGTTCGGCATGGGCGACTACTCGCTGCGCGTCTGGCTCGATCCGAACAAGACCGCTTCACGCAAC CTGACCGCCACCGACGTGGTCAACGCGATTCGCGAGCAGAACCGCCAGGTCGCTGCAGGCCAGTTGGGTGCACCGCCATCGCCGAATGCCACCAGCTTCC AGATGTCGATCAATACCCAAGGCCGTCTGGTCAGTGAGGAAGAGTTCGAAAATGTGGTGGTTCGCGCCGGTGCCGATGGCGAAATCACCCGTTTGAAGGA CATTGCCCGCATTGAACTGGGCTCCAGCCAATATGCATTGCGCTCGTTGCTCAATAACCAGCCTGCGGTGGCGATCCCGATCTTCCAGCGCCCCGGCTCC AACGCCATCGACATCTCCAACGATGTTCGGGCGCGGATGGCCGAGCTGAAGAAGAGCTTTCCGGAAGGCATGGATTACAGCATCGTCTATGACCCGACCA TTTTTGTGCGTGGTTCTATCGAGGCAGTGATTCACACGCTGTTCGAAGCACTGATTCTGGTGGTGCTGGTGGTGATCCTGTTCCTGCAGACCTGGCGCGC CTCGATCATTCCATTGGTTGCCGTACCGGTTTCGCTGATCGGTACCTTCGCCGTGATGCACATGTTCGGTTTCTCGCTGAACGCGCTGTCATTGTTCGGG CTGGTACTGGCGATCGGTATCGTGGTGGACGATGCCATCGTGGTGGTGGAGAACGTCGAACGGAACATCGAACTGGGGCTTGAACCGGTCGCCGCCACGC ACAAGGCCATGGCCGAAGTGACGGGCCCGATCATCGCTACAGCACTGGTGTTGTGCGCCGTGTTCGTGCCAGCTGCGTTCATTTCCGGGCTTACCGGACA GTTCTATAAACAGTTCGCGTTGACCATTGCCATCTCGACCGTTATTTCGGCGTTCAACTCGCTGACCCTGTCGCCTGCGCTGGCCGCCGTGCTGCTCAGA GGTCATGACGCACCCAAGGACCGCTTCTCACGCTTCCTCGACAAAATCCTCGGTGGCTGGTTGTTCCGCCCCTTCAACCGCTTTTTCGAGAAAGCCAGCC ATGGCTATGTCGGCACCGTCGCCAGGGTCATTCGCAGCAGCGGCATTGCCCTGCTGGTGTATGCAGGCCTGATGGTCCTGACCTGGATGGGCTTTGCCAG CACACCGACCGGCTTCGTCCCGAGCCAAGACAAGCAATACCTGGTTGCATTTGCCCAGTTGCCGGACGCTGCCAGCCTAGATCGCACCGAAGACGTCATC AAGCGCATGTCGGAGATCGCCCTCAAGCAGCCTGGCGTGCAGGACGCGATTGCCTTCCCCGGTCTGTCGATCAACGGCTTCACCAACAGCCCCAACAACG GCGTGGTGTTCGTGACCCTCAAACCGTTCGATGAGCGCAAGGACGCCAGCCTGTCGGCCAACGCGATTGCCGGCGCACTGAATGGCCAGTTCGCCTCGAT TCAGGAAGCCTACATGGCGATCTTCCCGCCACCGCCCGTACAAGGGCTGGGGACCATTGGCGGCTTCCGTCTGCAAATCGAAGACCGTGGCAACCTGGGT TACGACGAGCTGTACAAGGAAACCCAGAACATTATTGCCAAAAGTCGCAGCGTGCCGGAACTGGCCGGACTGTTTACCAGCTACACGGTGAACGTGCCGC AAGTCGACGCCGCGATCGACCGCGAGAAAGCCAAGACCCACGGTGTGGCGGTCAGCGACATCTTCGATACCCTGCAGGTGTACCTGGGTTCGCTGTATGC CAACGACTTCAACCGCTTCGGCCGCACCTATCAAGTCAACGTCCAGGCTGAGCAGCAATTCCGTCAGGATGCCGACCAGATCGGCCAGCTCAAGGTGCGC AACAACCTCGGCGAAATGATTCCGCTGGCCACCTTCGTCAAGGTCAGCGACACCGCCGGTCCTGACCGAGTCATGCACTACAACGGCTTTATAACGGCCG AGATCAACGGTGCCGCTGCACCGGGGTTCAGCTCCGGGCAGGCTCAGGCTGCGGTGGAAAAACTGCTTCGTGAAGAACTGCCCACCGGCATGATCTACGA ATGGACCGACCTGACCTACCAGCAGATCCTCTCGGGCAATACGGCGCTGTTCGTGTTCCCGCTCTGCGTTCTGCTGGCGTTTCTGGTACTCGCGGCTCAG TACGAAAGCTGGAGCCTGCCGCTGGCGGTCATCCTGATCGTACCGATGACCCTACTCTCGGCGATTGCCGGGGTAATGATTGCCGGTAGCGACAACAACA TCTTCACCCAGATCGGTCTGATCGTACTGGTAGGCCTGGCGTGCAAGAACGCGATTCTGATCGTCGAGTTTGCCAAAGACAAACAGGCAGAAGGCATGAG CCCGCTGGATGCAGTGCTGGAAGCTTGCCGCCTGCGTCTGCGGCCGATTCTGATGACTTCATTCGCGTTCATCATGGGCGTCGTGCCGCTGGTACTGTCC AGTGGTGCCGGTGCCGAAATGCGCCACGCAATGGGTGTCGCGGTGTTCTCCGGGATGCTCGGGGTGACCTTCTTCGGCCTGCTGCTGACGCCGGTGTTCT ATGTGTTGATCCGTAATTACGTCGAGCGCAAGGAGGCCCGCAAGGCCGCCCGTGCGCAGCAACTGCAAAACCTGCCTGCGGAGATGCATTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TGAGCGCGTTTAAACTCTTCGTCCCGAGCCTGCTGGTCATGGCGCTGGCGGCCTGCGCCGTCGGCCCGGACTACAAGACGCCGGAAACGGCGCCGGCAAA GCTGGAGTCTGCGGCACAGGGCAACTATGACCGCAGCAGGATGAACACCCTGTGGTGGCAGCAATTCGAGGACCCGACCCTCAATAAACTGGTCGCCAAA TCGCTCGATGGCAACCGCGACCTGCGCGTCGCGTTTGCCCGCCTCAAGTCTGCACGGGCGATTCGCGATGACGTCGCCAACGACGTCATGCCGGTGGTGA CCAGTCGTGCCAGCAGTGACATCGGCAAGGGTCAGCAGCCCGGCATCACCGAGCGCCGGGTCAACAGCGAGCGCTATGACCTGGGCCTCGACATGGCATG GGAAGTCGACCTGTTCGGGCGTATCCAGCGCCAACTGGAGGCTAGCGATGCTGACCAGGACGCGGCCGAAGCCAATCTGTATCAGCTGCAAGTAACCTTG
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MNFSKFFISRPIFAAVLSLLILIAGAISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETVASPLEQAITGVEGMLYMSSQATADGKLTLTITFALGT DLDNAQVQVQNRVTRSEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYAVLNIKDELARLGGVGDVQLFGMGDYSLRVWLDPNKTASRN LTATDVVNAIREQNRQVAAGQLGAPPSPNATSFQMSINTQGRLVSEEEFENVVVRAGADGEITRLKDIARIELGSSQYALRSLLNNQPAVAIPIFQRPGS NAIDISNDVRARMAELKKSFPEGMDYSIVYDPTIFVRGSIEAVIHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFG LVLAIGIVVDDAIVVVENVERNIELGLEPVAATHKAMAEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLR GHDAPKDRFSRFLDKILGGWLFRPFNRFFEKASHGYVGTVARVIRSSGIALLVYAGLMVLTWMGFASTPTGFVPSQDKQYLVAFAQLPDAASLDRTEDVI KRMSEIALKQPGVQDAIAFPGLSINGFTNSPNNGVVFVTLKPFDERKDASLSANAIAGALNGQFASIQEAYMAIFPPPPVQGLGTIGGFRLQIEDRGNLG YDELYKETQNIIAKSRSVPELAGLFTSYTVNVPQVDAAIDREKAKTHGVAVSDIFDTLQVYLGSLYANDFNRFGRTYQVNVQAEQQFRQDADQIGQLKVR NNLGEMIPLATFVKVSDTAGPDRVMHYNGFITAEINGAAAPGFSSGQAQAAVEKLLREELPTGMIYEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAAQ YESWSLPLAVILIVPMTLLSAIAGVMIAGSDNNIFTQIGLIVLVGLACKNAILIVEFAKDKQAEGMSPLDAVLEACRLRLRPILMTSFAFIMGVVPLVLS SGAGAEMRHAMGVAVFSGMLGVTFFGLLLTPVFYVLIRNYVERKEARKAARAQQLQNLPAEMH
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site