Pseudomonas syringae CC1557, N018_RS11500
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae CC1557, complete sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGGCTCAGTACGAAAGCTGGAGCCTGCCGCTGGCGGTCATCCTGATCGTACCGATGACCCTACTCTCGGCGATTGCCGGGGTAATGATTGCCGGTAGCG ACAACAACATCTTCACCCAGATCGGTCTGATCGTACTGGTAGGCCTGGCGTGCAAGAACGCGATTCTGATCGTCGAGTTTGCCAAAGACAAACAGGCAGA AGGCATGAGCCCGCTGGATGCAGTGCTGGAAGCTTGCCGCCTGCGTCTGCGGCCGATTCTGATGACTTCATTCGCGTTCATCATGGGCGTCGTGCCGCTG GTACTGTCCAGTGGTGCCGGTGCCGAAATGCGCCACGCAATGGGTGTCGCGGTGTTCTCCGGGATGCTCGGGGTGACCTTCTTCGGCCTGCTGCTGACGC CGGTGTTCTATGTGTTGATCCGTAATTACGTCGAGCGCAAGGAGGCCCGCAAGGCCGCCCGTGCGCAGCAACTGCAAAACCTGCCTGCGGAGATGCATTG
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| DNA Sequence for Gene |
>N018_RS11500
ATGAGCGCGTTTAAACTCTTCGTCCCGAGCCTGCTGGTCATGGCGCTGGCGGCCTGCGCCGTCGGCCCGGACTACAAGACGCCGGAAACGGCGCCGGCAA AGCTGGAGTCTGCGGCACAGGGCAACTATGACCGCAGCAGGATGAACACCCTGTGGTGGCAGCAATTCGAGGACCCGACCCTCAATAAACTGGTCGCCAA ATCGCTCGATGGCAACCGCGACCTGCGCGTCGCGTTTGCCCGCCTCAAGTCTGCACGGGCGATTCGCGATGACGTCGCCAACGACGTCATGCCGGTGGTG ACCAGTCGTGCCAGCAGTGACATCGGCAAGGGTCAGCAGCCCGGCATCACCGAGCGCCGGGTCAACAGCGAGCGCTATGACCTGGGCCTCGACATGGCAT GGGAAGTCGACCTGTTCGGGCGTATCCAGCGCCAACTGGAGGCTAGCGATGCTGACCAGGACGCGGCCGAAGCCAATCTGTATCAGCTGCAAGTAACCTT GATTGCCGAGGTGGTGGACGCCTACGGCCAGCTGCGCGGGGCGCAATTGCGTGAAGCCATCGCCCGGGACAACCTGACCAACCAGCAGAAGTCTCAGGAC ATCACCACTCAACTGCGCGATGCCGGGGTGGGCAACGAGCTGGATGTGATGCGTTCCGATGCGCGTCTCGCCGCAGTCGAAGCAACGGTGCCGCAATTGC AGGCTGAACAGGCTCGCCAGCGCAACCGCATTGCGACGCTGTTGGGCGAACGCCCGAACACCCTGAGCGTGGACCTGAGCCCGAGCAAGCTGCCGGCGAT TGCCAAAGCCTTGCCGATCGGCGATGCGACGCAGGTGCTACGCAACCGTCCCGACGTGCGCGCTGCCGAACGTCAGCTCGCGGCGTCGACTGCGCGGATC GGTGTGGCAACTGCCGACCTGTTTCCACGGGTCAGCCTGAGCGGCTTTCTGGGCTTTACCGCAGGACGTGGCTCGCAGATCGGCTCGTCCGCCGCCAGAG CCTGGTCGCTGGGCCCGAGCATCACCTGGGCGGCCTTCGATCTGGGCAGTGTCCGGGCGCAGATTCGCAGCGCCGATGCGGATGCCGAAGGTGCACTGGC CAACTATGAGCAGCAGGTATTGCTCGCGCTTGAAGAGTCGGAAAACGCGTTCAGCGATTACAACAAGCGTCAGCAACGCCTGGTGGCCCTGATGCGCCAG AGCGAGTCGAGCCGCGCCGCCGCCAGACTGGCGTCGGTGCAGTACCGTGAGGGCACCGCAGATTTTCTGGTGCTGCTCGATGCCGAGCGCGAACGTCTGG CGGCAGAAGACTCCCAGGCTCAGGCGGAAATCGAACTGTATCGTGGCATCGTGGCGATCTACAAAGCGTTGGGCGGCGGTTGGCAGCCGCAAGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCTGAACGATCACGGTAAACACAGCCCCGCGCTCCCTTCAGGACGCGGGGCTTTTTTTGTCATTAATCCGCCGGCCGCACGATTGGCGTTTGACAGCTGC CACCCTCTATCCGAAGCTGCACCCCGTCATGTATTGGAAACCGATATGCCCAGACTGCCATTCAAGGGGTTATCGCCTCAACCTGTTACTCGACGTCGCT GGCTGATCGGCGCCGCAGTTGCATCGCTGCTAGCGCTTTCAATGGCATTCTGGTGGTGGCGCACGCCGGTACAGACCGCACCGGCCAGGCTGAGCCACAC CTACGAACAGGCGCTGCAACAGGCCCACGACGGCAAGCCCGGCGCCGCGCGCGTGCTCTACCAACAGCTGGCACGCACCGATCTGCCCGAGGAGCAGCGC ATCAACCTGCTTGCAGAATTGAGCGACTACCCGAGCCCTCAGGCCCTCAAGCTGCTTGATGCAGGTCTTGGTAATCCGTCCCCCCGCATACGCGAAGCGG
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| Amino Acid Sequence |
>RND transporter
MSAFKLFVPSLLVMALAACAVGPDYKTPETAPAKLESAAQGNYDRSRMNTLWWQQFEDPTLNKLVAKSLDGNRDLRVAFARLKSARAIRDDVANDVMPVV TSRASSDIGKGQQPGITERRVNSERYDLGLDMAWEVDLFGRIQRQLEASDADQDAAEANLYQLQVTLIAEVVDAYGQLRGAQLREAIARDNLTNQQKSQD ITTQLRDAGVGNELDVMRSDARLAAVEATVPQLQAEQARQRNRIATLLGERPNTLSVDLSPSKLPAIAKALPIGDATQVLRNRPDVRAAERQLAASTARI GVATADLFPRVSLSGFLGFTAGRGSQIGSSAARAWSLGPSITWAAFDLGSVRAQIRSADADAEGALANYEQQVLLALEESENAFSDYNKRQQRLVALMRQ SESSRAAARLASVQYREGTADFLVLLDAERERLAAEDSQAQAEIELYRGIVAIYKALGGGWQPQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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