Pseudomonas syringae CC1557, N018_RS10720

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas syringae CC1557, complete sequence. [Details]
DNA Sequence Upstream of Gene
ACGTGTACCAACCATAACCTGCCGCAAAAAATCAGGGCTGGAGGGATATGCAAGTCGTGCGACGGTACTCCAGATTTCTTGCGGTTCAGAAATATTACTC CCGTCACCAAAAGCTACGCGCCACCTATGACCCGAGATTTTCTCTGGCGGGTCATTAGCAATATGTCGCTGAATTACCTTTCTCTGGCAAGTGTGGAAGC CTTGAAAGTCATTCTTGAGACTTACGATTTGCCACGCTATTACGACAAGCGGGCCGAGAAAGTCAGTCAGCATCTGTTAGGCGGACTCAAAGCCATCCGT CACGAGCACGTTGATCGTTTGCACGATGGGCGACCGTTACGGGGTGTCAAAACCGAACTGCTTATTGCACCTGCCGAATGTGCAGATGAGGCCAGCCTGT TTCTGTTTGCTTCAGTCCTCAATGAATTCTTTGCGCTTTATGCCAGCTTGAATTCTTTCCATGAACTGCACGTGAAAACCGATCAGGGAGGTGGCTACGA
DNA Sequence for Gene
>N018_RS10720
ATGGACGCCACGCATGGGGCAGCAACCGCTGCTTTGACCGCGCTAAGCCAGGATATACGTGAGTATTCGGTCTATCAGGCGATACCTCTGATCCTTGGGG TCTTGCGCGAAATTTATCCGGCTGCTGATGATGAACAACTTCATGATTTCCTTGAATTGCGCGCAAATCCGGGACTTGCATTTCCAGGCAGCGATATCGA GTGCATGGGTTTTTTCGAAGACCACGGGAGCCTGTATGTCCGGCTGCACCTCAATATGATGAGTCTGGTCGGAGCAGGTTCGCCGCTACCGGCTTTCTAT GTCGAGCAAGCGGTGGGGGACCGAGACAAGTCCAATGCCACTCGCGATTTTCTGGACGTTTTTAATCATCGCCTGCAGAAGCTGATGTTGCCTGTCTGGC GAAAGTATCGCTACCACGCGGTGTTCAGCAGTGGCGCAACGGACCCATTTTCAGAGCAACTGTTCGCGCTGATCGGTTTGCATGGTGAGCGTATACGCGA AACGACCGAATTGAACTGGAGGCGTCTGTTGCCCTATCTGGGGCTGTTGAGCCTGCGTGCACATTCCGCAGCACTGATCGAGTCAGTGCTTCGTTATTAC TTCAAGCATGCCCCGCTATTCATCGAGCAATGCGTAGAGCGTGCAGTTGAAGTCAGCGTGCCTCAGCTTAATCGTCTCGGAAAAGCCAATAACCAGCTAG GGCGTAATGTGGTGCTGGGCAACCGAGTGCCCGATCGGGGTGGCAAATTTCGTATCCACATAAAGCAGCTCCACTGGGATCGCTTCCATGAATTTTTACC TATCGGTCCGAGTTACTTGCCATTAGGTGCTCTTGTGCGGTTCACGTTGCGCGACCCTCTGGATTACGACGTCTGTCTTGAACTTTTGAATGAAGACGTC AGGGATTTACGTATTGGTCAGGCAAACACCTGTCGCCTGGGGTGGACCAGTTGGCTGGGGCGTGAGCATTCGCGTGGTTTGGTAACGCTCAGCAGGCCGA GTCATTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GGATCACACATGATTAATCCAGATCTGCAACAACTCGTAAAATCTCTCGATATGCCTACCCGCAGAGAGCTTGAAGGCACCGCAGAACGCTGCGTTTCCA GAGGCAGCAGTAAGATTCTCGTAGAGGATTTGTTACGTGCACTACTTGAGCGCCCAGCGGGAATGCTTGCCCGTGCTCTGCTTGAGGTAAATATTCTGAC TGCTGAATTTGCAGGCGTTCTGTTTCCGCCCGTCGAGCAATGCGCTGACTGTACCCCGGTATTTGCTACCGAACTTGTTCAATGGCTTCAAGATGCCTTA TTGATTTCTACTCTGGATCTTGGGCAAAGCCATATTGATCAGGCTGCACTGATCCTGGCGTTGCTGCGTAATCCATTGCGTTACGCGGACCGCCCCTATC AGCCATTGCTGGCGAAGATCAATATTGAACGCTTCCGCGACTACGCCCTTGCTGAACAAATGACCGACGTAACGAAACACACTGTCGAACAAGGTGAATT
Amino Acid Sequence
>type VI secretion protein
MDATHGAATAALTALSQDIREYSVYQAIPLILGVLREIYPAADDEQLHDFLELRANPGLAFPGSDIECMGFFEDHGSLYVRLHLNMMSLVGAGSPLPAFY VEQAVGDRDKSNATRDFLDVFNHRLQKLMLPVWRKYRYHAVFSSGATDPFSEQLFALIGLHGERIRETTELNWRRLLPYLGLLSLRAHSAALIESVLRYY FKHAPLFIEQCVERAVEVSVPQLNRLGKANNQLGRNVVLGNRVPDRGGKFRIHIKQLHWDRFHEFLPIGPSYLPLGALVRFTLRDPLDYDVCLELLNEDV RDLRIGQANTCRLGWTSWLGREHSRGLVTLSRPSH
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site