Pseudomonas syringae CC1557, N018_RS10685
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae CC1557, complete sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CATCTATCAGACAGGCCATGAGGACGAAGCAATAGTCCAGGCGTTCAAGCACGAGATTGGTATTCCGTGTGACCCTCAGTCTGGTCAACCTACAGGTCAA CGTGTTCACAAACCTGTCTGCATCACCAAGATTTTCGACCGGACATCGCCGTTACTTCTAGAAGCACTTTGCTCTGGTGCAACGATGAGCGAAGTGGAAA TCAAGTGGTATCGCACTTCCGCTCAAGGCAAACAGGAACATTACTACACCACCACCCTGACCGATGCAGTCATTGTCAAGATTGAGGACTACATGCCTAA CTGCCAAGACCCGAATAGCTCGCACTTCACACACTTGCAGGACGTGTATTTCAGCTATCGCAAAATCACTTGGGCCCACGTCAAAGCCACGACCAGTGGT TCTGACGATTGGAGAGAGCCCGCTTCGGCTTGATCCTCCTGTCCCGTCGATCTGCCCGGATCGATGGGACTCTCAGCGAACGGCTAAACAGGAGGCCCCT
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| DNA Sequence for Gene |
>N018_RS10685
ATGAAGGCGAAGTCTGCCCACTCAAAACACCTGACCCTAAGCCTTGATAGCCCCGACGGCACTGATCATGGCTTTCAGGTACTTGCATTCACCGGCCACG AAGCCATCAGCCAGCCCTTCTGCTTTACGCTGGAACTGGTCAGCGAGTGTGCATCGCTGGAACTTGAAAGCCTGCTTGGGCACCCGGCTTTTTTGCAATT CAGCCCCGATGGCAGCGGCGTCCACGGGTTGGTTGATCGCATAGCACAAGGCGATTCCGGCGCGCGCCTGACGCATTACGCAATCACGTTGCGACCGCAT CTGGCCCGACTGGGTCACCGCACCAATCAACGCATTTTCCAGCACAAGACGGTGCCGCAGATCATCGCCCAGGTGCTGGAAGATCACCGTCTGCTGGCCA ACGCCTACCGCTTCGAACTCGGCGCAACGTACCCGGAGCGAGAATACTGCGTGCAGTATGGCGAGTCTGATCTGCACTTCGTCCAGCGACTGTGTGAAGA GGAAGGTCTGCATTACCACTTTGAACACAGCCCGACAGCGCATCAGCTGGTGTTTGGCGATGACCAGACGGTGTTCGCGAAACTGGGGCCGGTGACCTAC AAGCAAGACACCGGCATGGCCGCCGACGATCCGGTGATCAGGCATTTCCAGTTGCGTCTGGAAACCCGCTCCAGTAGCGCTACCCGGCGCGATTACCATT TTGAAAAACCATTCCTGACCATGGAGGGCTCGGCACAGGATGAGGACCACCCAGACCTTGAGCACTACGATTACCCCAGCGGCTTCAGCCATCGTGATCG GGGTGCACATTTGGCCATACGTGCGCTTGAACGGCACCGCCACGATTACCGGCTCGGCGAGGGACACAGTAATCAGCCCCGACTGGTCAGCGGTCATTTT CTACAGCTGAGCGAACATCCCAACCAGGACTGGAACGACCTCTGGCTACTGACCGAAGTGCGCCACGAAGGCCGTCAGCCGCAGGTGCTGGAGGAATCAT CATCTATTGGCAAGGGCGATGACGACTTTCATCAGGGCTATCGCAATACGTTTCTGGCCACGCCATGGAAGACGCTGTACCGCCCTTCCCTGCGTCACCC CAAGCCGAGGATTTTCGGCAGCCAGACCGCCGTGGTCACCGGCCCGAAAGATCAGGAAATCCACTGCGACAAGCACGGCAGGGTCAAGGTGCAGTTTCAT TGGGATCGCGAAGGCCAGGGCGATGACCGCAGCAGTTGCTGGCTGCGGGTTTCGTCCAGCTGGGCCGGCCATCGTTACGGCGGCATGGTCATCCCGCGAG TCGGCATGGAAGTGCTGGTGACCTTTCTTGAGGGCGACCCCGACCGGCCGCTGATCAGCGGCTGCCTGTACCACGCCGAGCATGTCCCGCCCTACGATTT GCCCGCGCATCAGACCCGCAGTGTGTTCAAAACCTTGAGTAGCCCTGGCGGCGAAGGCTCGAACGAACTGCGCATAGAGGACCGGACCGGCCAGGAACAG ATCTACCTTCATGCCCAGCGCGACTGGGAGCAACACATCAGGCACGATCAGACAATCAACGTCGGTCATGAGCGCTATGACCGGGTTGAAGCCAATAGCT ACAGCGAGTTCAAGGCAGAGGAGCATCGGACCGTTGATGGCGACCGGCTGACTGAGCTCAAAATGAATGACCATCTGACGGTGGCCGGAACACAACACAT CAACGTGGGCGATAGATTGCTGGCGGAGGCCGGAAGAGAGATTCACATAAAAGCCGGAAGCAAACTGGTAATCGAAGCAGGATTGGAGATCACCCTCAAA GTCGCTGGCTCCTTCATTAAGCTGGACGCCGGTGGTGTAACGATCATGGGCCCACAGGTGAAGCTCAACTCGGGTGGCATCGCTGGTAATGGTTCGGGTG TCGCACCGTTGCTGCCAGGCCTGGTAAAGCATGCCGATGCAGCAAAAGCCGGGGAGCTGCTGACTCCCGCACAAGCACGGACAATAAAGCGCACTCCGTT TTGCGAGCAATGCGAGCGAGCAGCCGCGGAAGCCACGTCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATCAGGCCAACTACCTGCTGATTGACGGAGTGTTGCGGCCTGATGCAATCAAGCAGTTGTATCAGTGTGCCGAGCCTATGGAGATCATGCCGCTGTATCT GGGAACGCGTTGGTCAGCGGTCATGAATCAGGGCCCTGTGCTGGTGAGGGTTCCACCAGAATCTTCGCTGATTCGCGAATGGCTTGAGCCAACCACGTTA CGAACTGACGCGAGTATATTTTCCAGCAATGCCTCCCTGAAAAATGTAGCCGAGCACCTGTGCCGGTTTCTATGCCCATTCGACTACCTCGGCAATTCAA GCCTCCTGCGCTTTGCGGATCCGCTGGTGATGCACTACTGGTTATCCACTTACGACAACGAGCATATAAGCCAGATATTGGGGCCTATCAATCAGCTTTG GGTGCAGCTTCCGAGGCATGCCTGGCAGCACAACCCCTCTTCACTACCTGCAACATTTGTTAACCAGCATCCGAAAAAACGCTGGCAAGAACATTTCGCT
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| Amino Acid Sequence |
>type IV secretion protein Rhs
MKAKSAHSKHLTLSLDSPDGTDHGFQVLAFTGHEAISQPFCFTLELVSECASLELESLLGHPAFLQFSPDGSGVHGLVDRIAQGDSGARLTHYAITLRPH LARLGHRTNQRIFQHKTVPQIIAQVLEDHRLLANAYRFELGATYPEREYCVQYGESDLHFVQRLCEEEGLHYHFEHSPTAHQLVFGDDQTVFAKLGPVTY KQDTGMAADDPVIRHFQLRLETRSSSATRRDYHFEKPFLTMEGSAQDEDHPDLEHYDYPSGFSHRDRGAHLAIRALERHRHDYRLGEGHSNQPRLVSGHF LQLSEHPNQDWNDLWLLTEVRHEGRQPQVLEESSSIGKGDDDFHQGYRNTFLATPWKTLYRPSLRHPKPRIFGSQTAVVTGPKDQEIHCDKHGRVKVQFH WDREGQGDDRSSCWLRVSSSWAGHRYGGMVIPRVGMEVLVTFLEGDPDRPLISGCLYHAEHVPPYDLPAHQTRSVFKTLSSPGGEGSNELRIEDRTGQEQ IYLHAQRDWEQHIRHDQTINVGHERYDRVEANSYSEFKAEEHRTVDGDRLTELKMNDHLTVAGTQHINVGDRLLAEAGREIHIKAGSKLVIEAGLEITLK VAGSFIKLDAGGVTIMGPQVKLNSGGIAGNGSGVAPLLPGLVKHADAAKAGELLTPAQARTIKRTPFCEQCERAAAEATS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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