Pseudomonas syringae CC1557, N018_RS09010
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae CC1557, complete sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCCGTTCCAGATTTCCGGCCAGCCGAAAACCGTCAGCGCCGCGCCGGACAGCCTCCCGCGGGCTGCTTTTACCAGGTCGAATTGCCCCGAACCGTCCTT GTCTGCTTCGTTGCCCTCGCTGCCGAATTTCATCGGCACAGTGATGTGACTGTCGAAGGAAATGACCCGCTCTTGCAGGTCGTCGGCCTGCCTCATGATC TTCACCGGATAACCGGCGGGCGACCAGTAGTTCCAGGCCAGGTAACCCGCGCCTGCACTGATTGCCAGAGCCAGCGGCAGGCCGATGAAGAGAGCCATTT TCCAACGCGGTCTTGTCATTTCCGTCTCGTTTAAATAATCGTTGCGAAGCGGGCACGAGGGCCGTTGCTATCTGGAGGGAACGAGCGGATGGCCGAAAAA TTTAGCGCAGGGTTGTGCGTGCAGGCGCAGAGCTAAATTTGTCTGCCGGTTTTACGTTCTAGCTTGGATAACGGCGGTCTCGGGTTGGAACAGGTAGGCA
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| DNA Sequence for Gene |
>N018_RS09010
ATGACGATTTCTCGACGAGGGTTCATAGCAGGGCTGGCGCTGACCGGCGCAGTGGTTCCGGCTGCGTATTACGCGCATCGGGAGCTCACCCGTGTCGAGG AGCCCGTCACGCCGGGTGAGGCCACGGCCGGGCCTGCGGATACGTCTACTCGACGCCTGGCCGACAAATTGCGCGGGGTGTGGACGCTGCGTTTCGAGGG GCGCGATGCCGGTCTGAGCGGTGCACCGCTGGAAGGCCTGGAACTGTTTCTCGACATTGCCCCACGTGGACGTGGTGTGCGGGGCTACATCGATACTGCC GAGCAGTTGCGCAGCGATGGAATGCCGCGCTTCCGGGTGATTGGCGACCTGCAACCGGCCAATGCGGCAAAACTCTATCTGCGGGTCATGGACGGCCATG CGGGCAATGATCCGCACAGCGACACCCCGGATTACGAATTCAGCCTGACCCTCGATGAAGTCTGGGGCGCGTTCGGCAATGCGGGCAGCGGAACATTGAG CGGGCGTATCGAACGACTGGATCGGCCGCTGGCCCTGCCGGAACTGGAAAACCGTCTGATCGCAATCAAGCAGGTGTTTCCGGAGGCGCGGGAGCGAGTC GGTTTGAGCCCGCCATTTCTGGCCTGGCTGGTTTCCAAAGAACACCGCCTGTTCCATCAACTCTGGCACGCCTCGCGAGACAAATGGCACAAGCTGCCTG AAGACAAGCGCGATGCCTTGCGCGGCATCGGTTGGCAGCCGGGGCCGCGCGAGAAAGAGCGCGATGCCCGTGGCGCGCACAAGGACCGCAACGGCTCGGG CGAAGACTTTTTCTACATGCACCGGCACATGCTGATTCAGGCCCGCAAGATTCAGGACCTGCCGTCATGGCCGCGCTTTCCATTGCCCCAGCCGGAGCTG GAACGTGACCGCCTGGGCTTTGCCCGCTACTTCGACAATCACGATGGCTGCGCCTTGCCGCCCAACTGGCTGGCGCAGGGTGATGAGGAATACACACAAC TGGTCAGCGACATCAAAAGCCACGAGACGTACCACACGCATTTTCAGGTGTGGGAATCGCAGTACCGCGATCCACGTTTTCTGTCGAAGCTGACGTTGGG GCAGTTTGGTTCTCAGGTCGAGCTGGAACTGCACGATTGGCTGCACATGCGCTGGGCCTCAGTGGCCCGCGACCCTGCCAATGGCCAGCCGGTGCCGATG GCGCGACGCTCGGACGACTTCGCCGAGCGCTGGTTCGAGCCGGAAAACGACTTTCTGGCCGACCCGTTTTCGTCCCATGTGAACCCGGTGTTCTGGATGT TCCATGGCTGGATCGACGACCGAATCGACGACTGGTATCGCGCCCATGAACGCTTTCATCCGGGCGAAGTGAAACGCCTGGAGGTCAACGGCGTGCCATG GTTCGCGCCAGGCCGCTGGGTTGAAGTCAGCGACCCGTGGCTGGGTCCGGAAACCCATGGTTGCAGCACCGTGCCTGGGCAGGCTGCTGGCACGAGCATG GAAATGGACCCGGAAGTCATGAAGCTCGCACTGCGCATTACCTTTGCTGCGGATGACACGCTCAGCAACCTGCTGCGGCGCGTACCGCGCCGGCCATGGT ATGCGCGCAACCTGTTGCCAGACAGGTGGTTTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGAGCGGTAGTGGGATTATCGTTCCCTACGCTGCAGCGTGGGAGCGCAGTTCGCAACGCTCTGCGTCGCAAGAGGACGCGGAGCGTCCTGAACGGCGTGC CGACGCGGAGCGTCGCACGATCGTTGAGGTTATCGTTCCCTACGCTCCAGCTTGGGAGCGCAGTTCTCGACGCTCTGCGTCGCAAAGAGGACGCGGAGCG TCCTGAACGGCATGACGACGCGGAGCGGCGCACGATAGATCGTTTACCTGCCAACCTCCGCCCAGCGCTTTGTATAACGCAATGCTCGCCTGCACTCGCG CCAGCCGCAGTTGCACACTTACGTCCTGTGCCAGGTACAGCGTGCGTTGGGTTTCCAGCACGGTGAGCAAGTCCTCGGCACCGGCTTCGTAGCGGCTCTG CGCGATGCGGAAGGCGGTCTGCGCCTGCTTGAGCTCTTCTTCATGCCAGTAGCGTTGCTGGTCCAGGCCGCTGATGCTGTTCAGGGCTTTTTCCACGTCG
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| Amino Acid Sequence |
>PvdJ/PvdD/PvdP-like protein
MTISRRGFIAGLALTGAVVPAAYYAHRELTRVEEPVTPGEATAGPADTSTRRLADKLRGVWTLRFEGRDAGLSGAPLEGLELFLDIAPRGRGVRGYIDTA EQLRSDGMPRFRVIGDLQPANAAKLYLRVMDGHAGNDPHSDTPDYEFSLTLDEVWGAFGNAGSGTLSGRIERLDRPLALPELENRLIAIKQVFPEARERV GLSPPFLAWLVSKEHRLFHQLWHASRDKWHKLPEDKRDALRGIGWQPGPREKERDARGAHKDRNGSGEDFFYMHRHMLIQARKIQDLPSWPRFPLPQPEL ERDRLGFARYFDNHDGCALPPNWLAQGDEEYTQLVSDIKSHETYHTHFQVWESQYRDPRFLSKLTLGQFGSQVELELHDWLHMRWASVARDPANGQPVPM ARRSDDFAERWFEPENDFLADPFSSHVNPVFWMFHGWIDDRIDDWYRAHERFHPGEVKRLEVNGVPWFAPGRWVEVSDPWLGPETHGCSTVPGQAAGTSM EMDPEVMKLALRITFAADDTLSNLLRRVPRRPWYARNLLPDRWF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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