Pseudomonas syringae CC1557, N018_RS06195
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae CC1557, complete sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACTTTGATGGGGCCAAAGTAGGCAAACCCCCCTCGCTCCTGTTTCCGGCCCGACTTCGTCGGGTTCCTTCGCCCTGTCACTGATCCGGAGGTCGCCGCAA CGGGCCATCCATGGCCCGGTGCGGCTTGCTCGGCGTCCTGCCGAGCATCCCCCGGATCAGTGCCAGGACTCAGCCGTCACTAAGGTCGCAATCTGCGTCG CCAGGGCCATCGCGGTAAAAAAGCGCTTCTTTGTGCAGTGGCTACGGGCGAGGCATGACGCACTGCACAAGAGTCAGTTGGACTTGTGTATGACGCTGAG TGCTCAGCAGGGGTACCCCCTTCCGGACGCTCTGCGTCGTAATTTGCACATGCCCTTTTCAGGCGCCAAAAGCACCGGCCATCACTTTGATGCCAAATTG GCACCTTCTGTATTGGCAGGTTGAAAACAGCCTCTATACTTCACCTTAGATCGCCGGGTTTCAAGCCTCGGCGCCCTGTAGTGAACACATAGGGCACGCT
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| DNA Sequence for Gene |
>N018_RS06195
ATGGAGTGGCTGGGTTTAAACATGTTTGCTGGCTTTCCAGCGGACGGGCAACTGCTGATCGACTGTAGTCACAATATATTTCTCGTGGCGCTGGCTTACG GAGTGGCCTGCGCTGCGTGCTTTGCCACGCTGGACATTGCCGACCGGGTCATTCACGTCGAAGCTGTGAAAAGCCGTCGCCTGTGGAAAGCCCTGGGTGC GCTGTGCCTGGCTGGCGGCGTATGGGCCATGCACTTTATCAGCATGCTGGCCTTTCAGGCCCCGCTGGCGTTGACTTATGACCTGACCGTCACCCTGGTT TCATTGCTGATTGTGCTGCTGACTGCATTGATCGCAATGAGAGCATTGACCTCACCGACACTGAGCATCAAAAACTGCCTGTTCAGTTCGGTGGTGATGG GCATCGGCATCAGCGTCATGCACTACCTCGGCATGTCTGCGATGCGCTCGGCCGCCACTCAATACTACGAACCACGGATGTTCTCGCTTTCGATACTGGT TGCCGTCCTTTCCAGTATTGCGCTGCTGACACTGGCTCGGCACCTGCGTCAGCACAGTGGCATGTTCCACCAGATGTTTCGTTACAGCGTCAGCCTGTTG CTGGGTGCCGGCTTGCTGACCATGCACCTGATGGGCATGAAAGCATTACGACTGGTCATGCCCGAAGGCTCGGAACTGCTGACCCCCAGCACCGGGAACA GCCAGCAACTGGGGCTGACCATTGCCGCCATCACGCTGCTGATCATCGCCGGGAGTATCAGCGCTGCCATGGCCGACAAAAAGCTGCAAAGCAAGGAGCA TGACCTGCAACGGGTCAACACCCTGCTCAGCCAGTTGGATCAGGCTCGCGTCTCGCTGCAGCAAGTGGCGCATTACGACCCGCTGACCAACCTGATCAAC CGCCGCGGCTTCAATCAGATATTTGCCGAGAAACTGTTGGAGCACACCCTCGGTAACGGCATGCTCGCGGTGATGTTTCTCGACATCGACCACTTCAAGC GTATCAACGACAGCCTGGGCCACGATGCCGGTGACGAGTTGCTCAAGGTCATCGCCGAACGCATTCGCAGTGCGACGCGCGTGCAGGACGTGGTAGCGCG CTTTGGCGGCGACGAGTTCTGCATCTTGCTGAGCATTCCCGATTACGAAGAGGCGCGGCATCTGGCGCATCGGGTCATGCAGAAAATGAAGGAAACCATC GCCCTCGCGGGAAGACGCATGGTCATGACCACCAGCATCGGCATCGCCGTGTTTCCGCGTGATGGCGTCACCTGCGACGAACTGCTCAAACATGCCGACC TGGCGCTTTATCAGTCGAAAGGTGCCGGGCGCAATAGGGTCAATTTCTTCAGCCCGGACCTGAAAACCAAGGCCAGCATGGAGCTGCATCTGGAAGAAGA ACTGCGCAGCGCCTTGCGCGAAGAGACCGGTCTGCAAGTGTATTACCAGCCTATCGTTGACCTGCGCACCGGCCAAATTGCCAAGCTGGAAGCACTGGTG CGCTGGAATCATCCGCAGCACGGCCTGCTGGTGCCGGATCGGTTCATCGGCATCGCCGAGGCCAATGGTCTGATTGCCGAGCTGGATAACTGGGTCCTGC GCCGTGCCTGCCATGACTTGGGCACCTTGCGCCAGGAAGGCCTCGAACAGCTAATCATCGCCGTGAACTGTTCAGCACTCAATCTGGGCCGCGACGAACT GGTCGAAGAAGTCGAACACGCACTGGCCGACGCCAACGTCGCCCCCGGCCGACTGGAACTGGAAGTGACCGAAAACGCCCTGATGGGCAATATCAGCAAC ACCATTCTGATGCTCAAGCAGATTCGCAGCCTGGGAGTTTCGCTGTCGATTGACGATTTCGGCACCGGCTACTCATCGCTGGCCTACCTCAAACGTCTGC CTCTGGACACGCTGAAAATCGACCGCTCGTTCATCGTCGATATCCCCAAGTCTCCGCAGGACATGGAGATCGTCCAGGCGATTATCGTCATGGCGCACAC GCTGCGCCTGAAAGTGGTTACCGAAGGCGTGGAAACGCCTGAACAACTGGAATTTCTGCGCAAGTTTGGCAGTGATTACGTGCAAGGCTATCTGTTCAGC ACACCGCAGCCACTCGAGCGCATCCTGCCGCTGGTCAGGCAAATGAACCAGTTGGTCCCGGACACACTCTCGCCATCAGCGCCGAGGCTCGATACACCAG AGGCAGAGATCGACAACCAGCAATCGATGGATCTTTTCGCTGAATCGTCAGAGAGTGATCCCCTACCCCTTTTCAGGGCACCGCGTACGCTGCGAACACG AGTCAACGACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATATCAGCCGACAAGGCCTTGGGCGCGCCTGAACGCAATGTGTGGTCATGCGCTACTCAAACACCTCGACGGTTACCTTCCCACCCAGTCCGGCTCGCCC GCAGGCACTCTAAAAGTGCGGCTTTCAGTCTGACGCCCTGTTTTGAATCAAAACCCAAGGTGCCACTACCACCGCCCATAGCAGCGGATCGGTCTCTACC AGCTCAAGCGCCTTGGTTTCAGACACCTTGCCCACGCGCCCGTCTGCCAACCACGCAGACACCCTGGCTGCATCATTTTCGGCCACTGCCTCGGCGACTT CGATCAGATCCAGCGGCAGCTCGACCCACAACAGAGCACCCTTGGCAAAGAATGGTTGCAATTCAGTCCAGGCAATAGAGGCGGTTTCGCCGAGCAGTTT GGCATAGAGGGTGCTAGGTTCTTGCGTCATGGGTTTCACCAGGAAGGAAATCGGCCTAATGATAGCGCCGACCCTTTCAGGGAAAAACCCGGAAGCAGCT
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| Amino Acid Sequence |
>diguanylate phosphodiesterase
MEWLGLNMFAGFPADGQLLIDCSHNIFLVALAYGVACAACFATLDIADRVIHVEAVKSRRLWKALGALCLAGGVWAMHFISMLAFQAPLALTYDLTVTLV SLLIVLLTALIAMRALTSPTLSIKNCLFSSVVMGIGISVMHYLGMSAMRSAATQYYEPRMFSLSILVAVLSSIALLTLARHLRQHSGMFHQMFRYSVSLL LGAGLLTMHLMGMKALRLVMPEGSELLTPSTGNSQQLGLTIAAITLLIIAGSISAAMADKKLQSKEHDLQRVNTLLSQLDQARVSLQQVAHYDPLTNLIN RRGFNQIFAEKLLEHTLGNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDVVARFGGDEFCILLSIPDYEEARHLAHRVMQKMKETI ALAGRRMVMTTSIGIAVFPRDGVTCDELLKHADLALYQSKGAGRNRVNFFSPDLKTKASMELHLEEELRSALREETGLQVYYQPIVDLRTGQIAKLEALV RWNHPQHGLLVPDRFIGIAEANGLIAELDNWVLRRACHDLGTLRQEGLEQLIIAVNCSALNLGRDELVEEVEHALADANVAPGRLELEVTENALMGNISN TILMLKQIRSLGVSLSIDDFGTGYSSLAYLKRLPLDTLKIDRSFIVDIPKSPQDMEIVQAIIVMAHTLRLKVVTEGVETPEQLEFLRKFGSDYVQGYLFS TPQPLERILPLVRQMNQLVPDTLSPSAPRLDTPEAEIDNQQSMDLFAESSESDPLPLFRAPRTLRTRVND
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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