Pseudomonas syringae CC1557, N018_RS05025

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas syringae CC1557, complete sequence. [Details]
DNA Sequence Upstream of Gene
CCGGCGACACTGCGGCCAAGGTCAAGCTGACACTGGAAGACAACAGCGTCTACGGCCAGGAAGGCAAACTGGAGTTCTCCGAAGTGTCGGTTGACCAGAC AACCGGCTCGGTCACCTTGCGTGCAGTGTTCCCGAACCCTGAACACCGTCTGCTGCCGGGTATGTTCGTGCATGCGCAGTTGCAGGCTGGCGTCAACTCA AAAGCCATCCTGGCACCGCAGCAAGGCGTGACCCGCGACCTTAAAGGCACACCGACCGCCATGGTCGTCAACCAGGACAACAAGGTTGAAGTGCGCACGC TGGTTGCCAATCGCACGGTGGGCAGCGACTGGCTGATCGAAGACGGCCTGAAAGAGGGTGATCGCGTCATCACCGAAGGCTTGCAGTACGTCAAACCAGG TGCAGAAGTGAAAGTCGCCGAAGCGACCAACGTCAAAGGAGCAAACCCGGCGCCTGCCCCGGCCACTGATAAAGCCGCAGGCAGCAAAGGGGAGTAACCC
DNA Sequence for Gene
>N018_RS05025
ATGTCGAAATTTTTTATTGATCGACCCATTTTTGCCTGGGTTATTGCCCTCGTGATCATGCTGGTCGGTGCGCTGTCGATTTCCAGCCTGCCGATCAACC AGTACCCGAGCATCGCACCGCCAGCCATCGGTATCCAGGTCACTTATCCGGGCGCATCTGCCCAGACGGTGCAGGACACTGTGGTTCAGGTGATCGAGCA ACAGCTCAACGGTATCGACAACCTGCGTTATGTCAGTTCGGAAAGTAACTCCGACGGCAGCATGACCATTACTGCGACCTTCAATCAGGGCACCAACCCG GATACGGCGCAGGTTCAGGTGCAGAACAAGCTCAACCTCGCGACCCCGCTGCTGCCGCAAGAAGTTCAGCAACAGGGTATCCGCGTCACCAAGGCAGTGA AGAACTTCCTGATGGTGATCGGCCTGGTGTCGGAAGACGGCAGCATGGGCAAGGAAGACCTGGCCAACTACATTGTGTCGAACATGCAGGACCCGATCTC CCGGACCTCCGGTGTGGGCGACTTCCAGGTGTTCGGTTCGCAGTACGCCATGCGTATCTGGCTGGATCCGGCCAAGCTGAACAACTTCCAGCTGACCCCG GTTGACGTGAAAAACGCGATCACCGCGCAGAACGTCCAGGTGTCGTCCGGCCAGTTGGGCGGTCTGCCAGCGATCAGTGGCCAGCAACTCAACGCCACGA TCATCGGCAAGACCCGTCTGCAGACCGCCGAGCAGTTCGGCAACATCTTCCTCAAGGTCAACACCGACGGCTCGCAGGTTCGCCTGAAAGATGTCGCCAC GGTGGGCCTGGGCGCAGAGAACTACAGCACTGACTCGCAGTTCGACGGCAAACCGGCTTCCGGTCTGGCGATCAAGCTCGCCACCGGCGCCAACGCACTG GACACTGCCAAGGCCATCCGCGCGACCGTTTCGTCGCTGGAGCCGTTTTTCCCGCCTGGCATGAAAGTCGTTTACCCGTATGACACGACACCGGTGGTCA GCGAATCGATCAACGGAGTGGTGCACACCCTGATCGAAGCGATCGTGCTGGTGTTCCTGGTGATGTACCTGTTCCTGCAGAACTTCCGCGCCACCATCAT CACCACGATGACGGTTCCGGTGGTCTTGCTGGGTACGTTCGGCATCCTCGCGGCCTTCGGCTTCACCATCAACACCCTGACCATGTTCGGTATGGTGCTG GCCATCGGCTTGCTGGTGGACGATGCGATTGTGGTGGTGGAAAACGTCGAGCGGGTCATGGAGGAGGAAAAGCTCTCCCCGCGCGACGCCACGATAAAAT CCATGACCCAGATTCAGGGCGCGCTGGTCGGTATTGCCCTGGTGCTGTCGGCGGTTCTGTTGCCGATGGCGTTCTTCGGCGGCTCCACCGGGGTGATCTA CAAGCAGTTCTCGATCACCATTGTCTCGGCCATGGCCTTGTCGGTCGTAGTGGCCCTGATCTTCACCCCGGCGCTGTGCGCCACCATGCTCAAGCCCATC GATCACGAGAAGCACGGGCAACCGAAACGTGGTTTCTTTGGCTGGTTCAACCGTACTTTCGACCGCAGCGTTCTGAGTTATGAGCGCGGCGTCGGCAATA TGCTCAAGCACAAATGGCTGTCGTATCTGGGCTACATCGTGATCTGCGCAGGCATGGTCTTCATGTTCATGCGGATTCCTGCAGCGTTCCTGCCGGAAGA AGACCAGGGCGTTATCTTCGCCCAGATCCAGACCCCTGCCGGCTCTTCGACCGAGCGGACGCAGGAAGTCATCGATCAAATGCGTGAGTACCTGCTGACC AAGGAAAGCGGCGCAGTGAAGTCGGTGTTCTCGGTAAACGGCTTCAACTTCGCGGGCCGCGGCCAAAGCTCGGCGATTGCGTTCGTGATGCTCAAGCCGT GGGAAGAGCGTGACTCGAACAACAGCGTCTTCGAACTGGCCAAGCGTGCCCAAGGCTACTTCTTCAGCCTGCGCGATGCGATGGTGTTTGCCATCGTGCC GCCTTCGGTGCTGGAACTGGGTAACGCAACAGGCTTCGACGTTTACCTGCAAGACCAGGGCGGCGTCGGTCACGAAAAACTGATGGCAGCCCGTAACCAG TTCCTCGGCATGGCCGCCCAGAGCAAGATTCTGGCAGGCGTGCGTCCGAACGGGTTGAACGACGAGCCGCAATATCAGTTGATCATCGACGACGAACGCG CCAGTGCTTTGGGTATCACCCTGTCGGACATCAACAACACTCTGTCCATCGCGTTGGGTGGCAGCTACGTCAACGACTTCATTGACCGTGGCCGTGTGAA GAAGGTGTACATCCAGGGCGACGCGGGTGCGCGTATGAAGCCTGAAGACCTGAAGAAGTGGTACGTGCGCAACAGCGCGGGTGAGATGGTGCCGTTCTCG GCCTTCGCCAGCGGCAAATGGTCCTACGGCTCACCAAAACTGTCGCGCTACAACGGCGTGGCGGCAGAGGAAATTCTCGGTACGCCGGCACCGGGCTACA GCAGCGGCGATGCGATGGCCGAAGTTGAAGCACTGGCCAAGAAACTGCCACAAGGTATCGGCATCTCCTGGACCGGTCTGTCCTACGAGGAGCGCTTGTC CGGCTCGCAGGCCCCTGCCCTGTACGCCCTGTCGTTGCTGGTCGTGTTCCTGTGTCTGGCTGCGCTGTATGAAAGCTGGTCGATTCCGATCGCGGTCATC CTCGTGGTGCCACTGGGGGTTATCGGTGCACTGATGGCAACCAGCCTGCGCGGTCTGTCCAACGACGTGTTCTTCCAGGTCGGATTGCTGGTGACAGTGG GTCTGGCGGCGAAGAACGCCATCCTGATTGTCGAGTTCGCCAAAGAGCTGCACGAACAGGGCAAGAGCCTTGCCGAGGCAGCGATCGAAGCGTGCCGCAT GCGTCTGCGCCCGATCATCATGACCTCCATGGCCTTCATTCTTGGCGTTGTGCCACTGGCGATCTCGTCGGGTGCGGGTTCAGGTAGTCAGCATTCGATT GGTACTGGCGTAATTGGCGGTATGATCACAGCCGTTATTCTGGCGATCTTCTGGGTGCCCCTGTTCTTCGTCTCGATCTCAGGGCTGTTCAAGAGCAAGC AGAAACATACTTCACACGATGAGGCTGGCCAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCAAGTCATTGATCTCTCTTGCAGTTACCGCGTTCATTCTCGGCGGCTGCTCTTTGATCCCCGAGTACAAGCAGCCGGAAGCACCGGTCGCCGCACAATA CCCGCAAGGTCCGGCTTACTCGCCGGTCGAGGCGGCCAAAATGGCCGCTGCGGAACAAGGCTGGCGCCACTTCTTCAATGATCCGGCGCTGCAACAGCTG ATTCAGACCGCGTTGCTCAATAACCGTGACCTTCGGGTCGCGGCGCTGAACATCGACGCCTACCGCGCCCAGTACCGCATTCAGCGCGCGGACCTGTTCC CGGCTGTTTCGGCAACCGGCAGCGGCAGCCGCCAACGCGTGCCTGCCGGCCAGTCGCAGACTGGTCAGGCCGGCATTACCAGCAGCTATTCGGCAACGCT GGGCGTCAGCGCCTACGAGCTGGATCTGTTTGGTCGAGTGCGTAGCCTCAGTGAACAAGCGCTGGAAAACTACTTCTCCACTGAAGAAGCGCGTCGCAGC
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MSKFFIDRPIFAWVIALVIMLVGALSISSLPINQYPSIAPPAIGIQVTYPGASAQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNP DTAQVQVQNKLNLATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVGDFQVFGSQYAMRIWLDPAKLNNFQLTP VDVKNAITAQNVQVSSGQLGGLPAISGQQLNATIIGKTRLQTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANAL DTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMVL AIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPI DHEKHGQPKRGFFGWFNRTFDRSVLSYERGVGNMLKHKWLSYLGYIVICAGMVFMFMRIPAAFLPEEDQGVIFAQIQTPAGSSTERTQEVIDQMREYLLT KESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDSNNSVFELAKRAQGYFFSLRDAMVFAIVPPSVLELGNATGFDVYLQDQGGVGHEKLMAARNQ FLGMAAQSKILAGVRPNGLNDEPQYQLIIDDERASALGITLSDINNTLSIALGGSYVNDFIDRGRVKKVYIQGDAGARMKPEDLKKWYVRNSAGEMVPFS AFASGKWSYGSPKLSRYNGVAAEEILGTPAPGYSSGDAMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAPALYALSLLVVFLCLAALYESWSIPIAVI LVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKELHEQGKSLAEAAIEACRMRLRPIIMTSMAFILGVVPLAISSGAGSGSQHSI GTGVIGGMITAVILAIFWVPLFFVSISGLFKSKQKHTSHDEAGQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site