Pseudomonas syringae CC1557, N018_RS04860
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae CC1557, complete sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTACGCCGCTTATGGGGTTCCGGTCCATATATCGATATAACCCGATATTCCGATTTGATCGTTGCTCAGCACGAAATCATATTTGTATATCGCGAAATAC AGATATAAAGTTCGCCCCATCGCGATATATCGCTATACGCCTGTGAGAACGACATGCCAATTGACCTCGACGACATAATAAAAGCTCTGGCCCATCCGGT CCGCCGAGAAATCCTGACCTGGCTGAAGGACCCGCGCGCGAGTTTTCCGGCTCAGGAACACTCGATCGAACATGGCGTCTGCGCCGGACAGATCGATCAG CGCGCAGGGTTGTCCCAATCCACTGTGTCAGCCCACCTCGCAACGCTGCAACGCGCCGGGCTGATCAGCAGCAAGAAGGTCGGCCAATGGCATTTCTTCA GACGCAACGAAGAAGTCATCCAGGCATTCGTACAGGCACTGCTTGAAGAGCTGAACAACCCGACCTGATTTTTTTCACCTTTTGTTCCTGGAGATGCCCC
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| DNA Sequence for Gene |
>N018_RS04860
GTGCCCCTTTCGCTACTCATTCTGGCCCTGAGCGCCTTCGCCATCGGCACCACTGAATTCGTCATCATGGGCCTGCTGCCCGACGTCGCCGCCGACCTCG GCGTATCGATCCCCGGCGCTGGCTGGCTGGTGACCGGCTACGCCCTGGGCGTGGCAGTCGGCGCACCGTTCATGGCCATGGCCACGGCAAAACTGCCACG CAAGGCCGCACTGGTCACGCTGATGGGGATTTTCATCATCGGTAACCTGCTCTGTGCGTTGGCCAGTGATTACAACGTGCTGATGTTCGCCCGTGTCGTT ACCGCACTGTGCCACGGCGCGTTCTTCGGTATCGGCTCGGTGGTTGCCGCAGGCCTGGTGCCGGCCAACCGTCGTGCGTCCGCTGTGGCCTTGATGTTCA CCGGTCTGACCCTGGCCAACGTGCTGGGCGTGCCGCTGGGCACCGCATTGGGTCAATACGCAGGCTGGCGCTCGACGTTCTGGGCAGTGACCGTCATCGG CGTCATTGCGCTGATCGGCCTGATTCGCTTTCTGCCGACCAATCGCAATGAAGAAAAGCTCGACATGCGCGCCGAACTGGGAGCCCTCAGAGGTGCCGGT ATCTGGTTGTCGCTGAGCATGACTGCGCTGTTTTCAGCCTCCATGTTTACCTTGTTCACTTACATCGCCCCGCTGCTCGGCGAAGTGACTGGCGTATCGC CCAACGGCGTGACCTGGACCCTGCTGCTGATCGGCCTTGGCCTGACCGCCGGTAACGTGCTCGGCGGCAAAATGGCCGACCGCCGCCTGTCGTCCACACT GATTGCCGTGTTCGTTTCGATGGCGGTGATTTCCACCGTCCTCAGTTGGACCAGCGCATCGCTGATCCCGACTGAAATCACCCTGTTCCTCTGGGCGGTC GCGGCTTTCGCTGCGGTCCCGGCGTTGCAGATCAATGTGGTGACCTTCGGCAAGGCGGCACCCAACCTGGTTTCGACCCTGAACATCGGCGCCTTCAACG TTGGCAACGCGCTCGGCGCCTGGGTCGGCGGCAGCGTTATCGCTCACGGCCTGGGCCTGACCAGCGTGCCACTGGCGGCTGCTGTACTGGCAGTGCTCGC GCTGCTGATCACCCTGATTACTTTCCGTCAGACCGGCAACCCGGATCTGGCACACGCTACTAATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAATTACGAGGATTCGATACATGACGACTATCTTTGACCCTATCACCCTGGGCGATCTGCAACTGCCAAACCGCATCATCATGGCGCCGCTGACACGCT GCCGCGCCGATGAAGGCCGCGTCCCCAATGCAATGATGTCCGAGTATTACGTACAACGCGCCTCGGCAGGTCTGATCCTGACTGAAGCTACCTCGGTCAC GCCGATGGGCGTGGGCTACCCGGACACCCCTGGCATCTGGTCCAATGATCAGGTGCGTGGCTGGAGCAACATCACCAAGGCGGTGCACAACGCCGGTGGC CGCATCGCGCTGCAACTGTGGCACGTAGGGCGCATTTCCCACCCTTCTTACCTGAACGGCGAAACCCCGGTTGCGCCGAGCGCCATTGCAGCTGAAGGGC ATGTGAGCCTGATGCGCCCTATCACGCCGCTGCCAGTGCCGCGCGCGCTGGAGCTGGCGGAAATCGGCGACATCGTCGAGGCCTATCGGATCGGCGCGGA
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| Amino Acid Sequence |
>arabinose transporter permease
MPLSLLILALSAFAIGTTEFVIMGLLPDVAADLGVSIPGAGWLVTGYALGVAVGAPFMAMATAKLPRKAALVTLMGIFIIGNLLCALASDYNVLMFARVV TALCHGAFFGIGSVVAAGLVPANRRASAVALMFTGLTLANVLGVPLGTALGQYAGWRSTFWAVTVIGVIALIGLIRFLPTNRNEEKLDMRAELGALRGAG IWLSLSMTALFSASMFTLFTYIAPLLGEVTGVSPNGVTWTLLLIGLGLTAGNVLGGKMADRRLSSTLIAVFVSMAVISTVLSWTSASLIPTEITLFLWAV AAFAAVPALQINVVTFGKAAPNLVSTLNIGAFNVGNALGAWVGGSVIAHGLGLTSVPLAAAVLAVLALLITLITFRQTGNPDLAHATN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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