Pseudomonas syringae CC1557, N018_RS04820
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae CC1557, complete sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCCGCTGACCAGCGGTGACAAGCCGTTGCTGACCTGCGATGTCTGGGAACACGCCTACTACATCGACTATCGCAACCTGCGTCCGAAGTATGTAGAAGC GTTCTGGAACCTGGTGAACTGGAAATTCGTGGCTGAGCAATTCGCTTCCTGAGTCCGGCAACCCTGAAGAACCCGGCCATGCGCCGGGTTTTTTATGGCC TGCCCCCAGCGAAATGCCCTCGGACGACCAGTTTTTCATCCATGCGAAGCAGAAATGTTTTTAACCTGCCGCCTGTACTTTTGTATTGTCAGAAAACGCT AGTTAGCTAATTATCACGACTTAATTCTTTACAGTGTCCTGCTCAAGTTACGCACATGGCCGCCCGATGCATCGAGGTGGCGTGGGCCAGTGGGTGCAAG GAACGCGAAGATCAGCCGGTGCGAGCCCTCTATGGGTCAACCGGTTTTTCGAGGGTGACGGGGCCATACGCGCCCTCCGACACGAACTAAGGAACGGCCA
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| DNA Sequence for Gene |
>N018_RS04820
TTGAAGCTGGAACTCAAGAACAGCCTGTCGGTAAAGCTGCTGCGTGTAGTGCTGCTGTCGGCGCTTCTGGTCGGCGTTGTATTGAGCTGCGCGCAAATCG TTTTCGATGCGTACAAGACCCGCCAGACAGTGGCGAGCGATGCAGAGCGGATTCTCGGCATGTTTCGCGATCCCTCAACCCAGGCGGTCTACAGCCTGGA CAGGGAAATGGGCATGCAGGTCATCGAAGGTCTGTTTCAGGATGACTCGGTACGCATGGCCTCGATCGGACATCCCAACGAAACCCTGCTTGCCGAAAAA GACCGCCCGCTGAAGGCATCACCGACGCGCTGGCTGACCGATCTCATTCTGGGCCAGGAGCGCAGCTTCTCCACGCAACTGGTAGGACGCAGCCCGTACA GTGAGTACTACGGCGACTTGCGCATCACGCTGGACACCGCCAACTATGGCGAAAGCTTTTTGGTCAACGCCGGGATCATCTTCATCGCAGGCGTACTGCG GGCACTGGCGATGGGGTTGGTGCTGTATCTGGTTTATCACTGGCTGCTGACCAAGCCATTGTCAAAAATCATCGAACACCTGACCACCATCAACCCGGAT CGCCCCAGCGAGCATCAATTGCCGCTGCTCAAGGGGCATGAAGAAAACGAGCTGGGAATCTGGGTCAACACCGCCAATCAACTGCTGGCCTCCATTGAGC GCAACACCTATCTGCGTCACGAGGCCGAAAGCAATCTGCAGCGCATGGCGCAGTACGATTTTCTGACCGGTTTGCCCAACCGACTCCAGTTGCAGACTCG GCTGGACCGGATTCTGGAGGATGCCGGACGTCAACAGCACCGGGTTGCAGTGCTCTGCGTGGGTCTCGATGACTTCAAGGGCATCAACGAGCAGTTCAGC TACCAGGCTGGCGACCAGTTGCTGCTGGCGCTCGCCGACCGGTTGCGTGCGCACAGCGGGCGACTCGGTGCTCTGGCGCGCCTGGGCGGCGATCAGTTCG CGCTGGTTCAGGCCACCATCGAGCAGCCCTACGAAGCGGCAGAACTGGCGCAAAATATTCTTGATGAGCTCGAAGCCCCGTTTGATGTCGCCGAACAGCG AATCCAGCTAAGGGCAACCATCGGCATCACCCTCTTCCCCGAGGATGGCGACAGCACCGAGAAACTGTTGCAGAAAGCCGAGCAGACCATGACGCTGGCC AAGGCCCGCTCGCGCAATCGCTATCAGTTTTACATTGCCAGCGTCGACAGCGAAATGCGCCGCCGTCGTGAACTCGAAAAAGACCTGCGCGACGCCTTGC CACGCAATCAGTTGTACCTGGTCTATCAACCGCAGGTCAGCTATCGCGACCACAGTGTGGTCGGCGTTGAAGCGCTGATTCGCTGGCAGCATCCGGAGCA TGGCCTGGTGCCGCCGGACGTGTTTATCCCGCTGGCCGAGCAGAACGGCACCATCATCGCCATTGGCGAATGGGTGCTCGACCAGGCCTGCCGCCAACTG CGCGAGTGGCTTGATCAGGGCTTCACCGATTTACGCATGGCGGTGAACCTGTCGACCGTGCAGCTGCATCACGCCGAGCTTCCCAGGGTCGTGAACAACC TGTTACAGATATATCGCCTGCCGCCCCGCAGCCTGGAACTGGAGGTCACCGAAACCGGCCTGATGGAAGACATCAACACCGCCGCCCAGCACTTGCTCAG CTTGCGACGCTCTGGTGCGCTGATTGCCATCGATGACTTCGGCACGGGTTACTCATCGCTTAGTTACCTGAAAAGTCTGCCGCTGGACAAGATCAAGATC GACAAGAGTTTCGTCCAGGACCTGATTGATGACGACGATGACGCCACGATCGTGCGGGCGATTATTCAGTTGGGCAAAAGCCTGGGTATGCAGGTGATTG CCGAGGGCGTGGAAACGGTTGAGCAGGAAGCCTACGTCGTGGCCGAAGGCTGCCATGAAGGTCAGGGCTACCTGTACAGCAAACCGCTGCCGAGCCGTGA GCTGCTGACGTATTTGAAGCAGGCACGTCAGGGCAATCCGGTCATACCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAATTGACGCACAGGCCGGGCTGCTCAAGCTGCCTTGAAACCATCTGTTACAACCTCTCGAATACCTGATCACGCCGGCAAAGGCGTTTTGCCTTTACAT CGAATGCAAATCTTTCGCATCATGTCGCAGATTTTCTGGGCGCACCTCCGCCTTAACCCTATCGACGCAGGATTCCGTCATGATTCGTATGCCTCTGGCA ACCGCTAGTCTGTTGGCCATCGCTATCTCTCTCGCCGGTTGCGGTGAAGGCAAGGACAAGGCAGCCGCACCGGCTCCCGCCGCAACCCCTGCCGCCCCGG CTAGCGCGCCAGCGCCTGCTGCACCCGCCGCCGCACCGGCTGCCGCAGCCCAGACAGACGATGCCGCTGCCAAAGCTGTCGTTGCCAACTACACCAACAT GGTGTCAGCAGTGTTCGACGATGCCGAAGCCGGTGCGAAAAAACTGAGCACCGCCGTCGACGCGTTTCTGGCCAAACCCAATGACGAAACCCTGAAAGCT
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| Amino Acid Sequence |
>diguanylate cyclase
MKLELKNSLSVKLLRVVLLSALLVGVVLSCAQIVFDAYKTRQTVASDAERILGMFRDPSTQAVYSLDREMGMQVIEGLFQDDSVRMASIGHPNETLLAEK DRPLKASPTRWLTDLILGQERSFSTQLVGRSPYSEYYGDLRITLDTANYGESFLVNAGIIFIAGVLRALAMGLVLYLVYHWLLTKPLSKIIEHLTTINPD RPSEHQLPLLKGHEENELGIWVNTANQLLASIERNTYLRHEAESNLQRMAQYDFLTGLPNRLQLQTRLDRILEDAGRQQHRVAVLCVGLDDFKGINEQFS YQAGDQLLLALADRLRAHSGRLGALARLGGDQFALVQATIEQPYEAAELAQNILDELEAPFDVAEQRIQLRATIGITLFPEDGDSTEKLLQKAEQTMTLA KARSRNRYQFYIASVDSEMRRRRELEKDLRDALPRNQLYLVYQPQVSYRDHSVVGVEALIRWQHPEHGLVPPDVFIPLAEQNGTIIAIGEWVLDQACRQL REWLDQGFTDLRMAVNLSTVQLHHAELPRVVNNLLQIYRLPPRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKI DKSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVETVEQEAYVVAEGCHEGQGYLYSKPLPSRELLTYLKQARQGNPVIP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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