Pseudomonas syringae CC1557, N018_RS00570
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae CC1557, complete sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGAGCTTTTTCAGGAGTTGCTGGCCTGATCGAACTGTTTTCGGGCATTGGGTTACAGTTTAAAACCTTACCGTTTGTGGCTTGCCGCTTGATGCTTGAC CTTGTCCGCTTGTAAACTACCGAGTCCGCTCGCCCATCCGGGCATCGCGCATCCGCATTTGCTACGAGGAATACCCATGGCCCGCGTAACCGTTGAAGAC TGCCTAGAACACGTGGATAACCGCTTTGAGCTGGTCATGCTCTCCACAAAGCGTGCCCGTCAACTGGCAACCGGCGGCAAAGAGCCAAAGCTGGCGTGGG AAAATGACAAGCCTACGGTTATGGCCCTGCGCGAAATCGCTGCTGGCGTGATGAGCTACGATGTAATCGCAGAAGCCGAAATCGTTGAAGATGAGCCATT GTTTGCAGCGTTCGAGGACGAGTCAAACGAGGCCGTCTAAGCCTATGCCGGGTCGACGTAGTACGGCGCAGGGTAAAAGCCATTGGCAGGGGGTAGCGCC
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| DNA Sequence for Gene |
>N018_RS00570
TTGCCGAGCATAGACGCCCTCGCCGACAGACTGTCGGCTTACCTCGGCAAGGACCAGGTCAATCTGGTTCGCCGAGCGTACTTCTACGCCGAACAAGCCC ACGACGGCCAGCGCCGTCGCAGCGGCGAAGCGTATGTTACCCACCCGCTCGCGGTGGCCAATATTCTTGCCGACATGCACATGGACCATCAGAGCCTGAT GGCTGCGATGCTGCATGACGTGATCGAAGACACCGGTATTGCCAAGGAAGCGCTCAGCGCGCAGTTCGGCGAGACCGTTGCGGAACTGGTCGACGGGGTC AGCAAACTGACCCAGATGAACTTCGAGACCAAGGCCGAAGCCCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCGCGCGACATTCGCGTGATCC TGGTCAAGCTCGCTGATCGCCTGCACAACATGCGCACGCTTGAAGTCCTGTCTGGCGAGAAGCGTCGACGTATTGCCAAGGAAACCCTCGAAATCTATGC GCCCATCGCCAATCGGCTGGGCATGCACAACGTGCGCATCGAATTCGAGGATCTGGGCTTCAAGGCCATGTACCCGATGCGTTCCTCGCGAATCAACCAG GCGGTCAAGCGCGCCAGGGGCAATCGCAAGGAACTGGTCAACAAGATCGAAGAATCCCTGAGCCATTGCCTGGCCGTTGATGGCATCGAAGGTGATGTCA GCGGGCGGCAGAAGCATCTTTACGGTATCTACAAGAAGATGCGCGGCAAGCGCCGTGCCTTCAACGAGATCATGGACGTTTACGCGTTCCGTATCATCGT CGACAAGGTCGATACCTGCTATCGCGTGTTGGGCGCTGTACATAATTTGTACAAGCCATTGCCTGGCCGTTTCAAGGATTACATCGCGATTCCCAAAGCC AACGGCTATCAGTCGCTACATACCACTTTGTTCGGTATGCATGGCGTGCCCATTGAAATCCAGATTCGCACCCGCGAAATGGAAGAAATGGCCAATAACG GAATCGCCGCGCACTGGCTGTACAAGTCCAGTGACGACGAGCAGCCCAAGGGCACTCATGCTCGTGCCCGGCAGTGGGTCAAAGGCGTGCTGGAAATGCA GCAGCGCGCGGGCAACTCGCTGGAGTTCATCGAAAGCGTCAAAATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCGAAAGGCCGGATCATGGAG CTGCCCAAAGGCTCCACCGCCGTGGACTTTGCTTACGCGGTACACACCGACGTCGGCAACAGCTGCATCGCCTGCCGTATCAACCGCCGACTGGCGCCGC TGTCCGAACCGCTGCAAAGCGGCTCCACCGTCGAAATTGTCAGTGCTCCCGGCGCACGTCCAAATCCGGCATGGCTGAACTTCGTCGTCACCGGCAAGGC GCGCACGCACATTCGTCACGCGCTCAAGCTGCAGCGCCGTTCCGAGTCGATCAATCTCGGCGAGCGTCTGCTGAACAAGGTCCTCAACGGTTTCGAATGC AGCCTGGACAAGGTCTCTGCGGAGCGTGTCCAGTTGGTGCTGACCGAATACCGTGTCGAAGTGCTGGAAGACCTGCTCGAAGACATCGGGCTCGGCAATC GCATGGCCTATGTCGTCGCCCGTCGCCTGCTGGGCGAAGGCGATCAGCTGCCGAGTCCGGAAGGTCCGCTGGCGATTCGCGGCACCGAAGGTCTGGTACT CAGCTACGCCAAGTGCTGTACGCCGATTCCGGGCGATCCTATTGTCGGTCACCTGTCTGCGGGCAAGGGCATGGTCGTGCACCTGGATAACTGCCGCAAC ATCAGCGAAATTCGTCACAACCCGGAAAAATGCATCCAGCTTTCCTGGGCCAAGGACGTCACCGGCGAATTCAACGTCGAATTGCGTGTCGAACTGGAGC ACCAGCGTGGCCTGATCGCCCTGCTGGCCAGCAGCGTCAACGCCGCCGACGGCAATATCGAAAAAATCAGCATGGACGAGCGCGATGGCCGCATCAGCGT GGTCCAACTTGTGGTCAGCGTACACGACCGGGTGCACCTGGCCCGCGTGATCAGGAAATTGCGCGCCCTTGCCGGGGTGACTCGTATCACCCGGATGCGC GCGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTCATTCAATAATCAGGAGTTATTCATGACCAAGACTGTCATCACCAGCGAAAAAGCCCCGGTGGCCATCGGCCCTTATTCTCAGGCGATCAAAGCTGGC AATACCGTCTACATGTCCGGACAGATTCCGCTGGATCCAGCGACCATGGAGCTGGTCGAGGGCATTGAGGCACAAATCATTCAGGTTTTCGAAAATCTTA AGTCGGTTGCAGAAGCCGCAGGCGGCTCCTTCAAGGACATCGTCAAGCTGAACATCTTTCTGACTGACCTGTCTCACTTTGCCAAGGTCAACGAAATCAT GGGCACTTACTTCTCGCAGCCTTACCCAGCGCGCGCTGCCATTGGCGTTGCTGCACTGCCGCGTGGTGCTCAGGTCGAAATGGACGCGATTCTCGTCATC GAATAAATCCCCCGACGGAGCGTGCCTTGCGCTCCGTTTTCCCTGAAGGAAGGAATCCGTTATGCGCTCCGCGCTCGTCATCTCGCTGCTCGCCGTCATT
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MPSIDALADRLSAYLGKDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALSAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHNVRIEFEDLGFKAMYPMRSSRINQ AVKRARGNRKELVNKIEESLSHCLAVDGIEGDVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSDDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESINLGERLLNKVLNGFEC SLDKVSAERVQLVLTEYRVEVLEDLLEDIGLGNRMAYVVARRLLGEGDQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIRKLRALAGVTRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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