Pseudomonas stutzeri NT0128, UF78_RS00465
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri strain NT0128 268_45237_9192573_176____243, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGGAACTCAGGCGCAGGGGTGAGATGCGCTTTTACGGCAAGAGCGATCTGGAACTGCGTGCCATTTACGCCGATGCGGTGGAGCAGGCGGAACGCGTTCG AGCTGAACAGAGTCCGGCACTCACTCGAACTCAGCAACGTTTGCTAGCGCAGGCGGAGCGTTTGGTGACGCCACGCAGCGTCTTCGGTGAACACGCGGAA CGGGTAGACCTCGCAGAGTTGGTAGCGCAGTGGCGCGGCATCAAAGACAACCAGACCGCAGAACACCTGGCGACCATCAAACAGAAAAGTGCCCGAGCCT TCGCCTAGAAGACTCGTTACGCCTTACCAGCCCTCCGCGTTTATAGCCCCAGCTCTCGTTTCCGACGCAAACCGGCTATTTTTCGTGACCCCGTTCACCC ACGCGCGCACCTGGGTGAACTTCAATACTCAGCCTGAGTCTCGCTTCGTCGTTTCGGCGAGCGGGGCCGTCTGCCCACACGCTTTCAAGGAGGAAATCGC
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| DNA Sequence for Gene |
>UF78_RS00465
GTGCTAGCCCGCTATTGCGCCCTCGTTTTATTCGCCGCATCCCTCGCCCTCGCCGGTTGCTCCGGCAACTACAAGTTCAATGATGACGAATATCGCCCGT TGGGTGATCCGCAGGCGTCCATTCGCGGCAACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTCACTAGGAGAAAAAAACCATGGAATTGGTTTTCGATATGGTCAGTGCGCAGCAATTTGCGCCAGGCCTCATCAGCAGCAAAACCTTCAAGCAGGCCGG AGGCATCATTGGCCGTGCCGAGGACTGTGACTGGGTGATACCGGACCGCAAACGTGTCTTGTCCAGCCGCCACGCCGAAGTGAACTACCGGGACGGTGCC TTCTTCCTTACCGACATCAGCAGCAACGGTATCCAACTCAAAGACACTGGTGCCAGCCTGGACAAGGGCCGGGCGCAGCGCATCGAGCATGGCAGTGTGT ATTGTTTGGGGGGCTTCGAAATCCGTGCGCGGCTGATTCAGGATCCGGCCTCCTTTGAAGGCGATATCGGCCGTCCGCAGCCAGCCGGAAGCATCATTCC CGACGACGCCTTCCTCGATCTCGATCCACTAAATGCAATGGATCAGCAGGAGCGGGTCTATGCAGAGGTCGACGATCTTACCGCCGTGCTCGCCCCGCCT
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| Amino Acid Sequence |
>type VI secretion protein
MLARYCALVLFAASLALAGCSGNYKFNDDEYRPLGDPQASIRGN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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