Strain | Pseudomonas stutzeri strain NT0128 262_768688_135338178_129____244, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
ATGACCGCGTTCATTTGCGACTATCTGCGAATCATGTCGTCGGGCAACATGGCTCCGCATGAGCTGGAGGGGCTGTTCGACATGGAACTGAACAGCATGA AGGAGGAGCTCGAACATCCTTCTCATGCGGTATCCAAGATCGCCGACGGCCTGCCTGCGATGGGTATCGTCGCGGCGGTACTGGGTATCGTCATCACCAT GTCGGTGCTGGCCGAAGCGAACAATGCGGAAATCGGCGAAAAGGTTGGCACGGCGCTGGTCGGCACCTTCCTCGGTATTCTTGCGTCCTATGGATTCTTC GGGCCGCTGGCGGCCGCGCTCGAGCATGATGCCAAGGAGGAACTGAACCTCTACGAAGGCATCAAGGCAACCCTGGTTTCTTCCGCCTCCGGCATGCCGC CGACCCTGGCGGTGGAGTTCGGTCGCAAGGTGCTGTTTTCCGCGCATCGGCCTAGCTTCTCCGAGCTTGAACAAGCCATGCGTGGCAGCTAAGCGCAACC
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DNA Sequence for Gene |
>UF78_RS19300
ATGGACAATACCCAACCAATCATCATCAAGCGGGTCAAGAAATCCGCGGCCGGGCACCATGGCGGCGCCTGGAAGATCGCCTTCGCCGATTTCGCGACCG CCATGATGGCGTTCTTTCTGGTGATGTGGCTGATGTCTTCGGCCACGCCGGAGCAGAAGCGGGCCATTTCCGGTTACTTCCAGGACCCCATCGGTTTTAC CGAGAGCGCGAGTCCGCACGTCATCGATCTCGGCGGTACGCCCACGCCGTCGCCGGACCGCACGCTCAATGAGGAGGTTGATCCGGCGATCCAGCAGAGC GAATCGAAGATCGACGCCGATCAGGCGGAAACCTTCGCCGAGCAGTTGGAGCGCGAGCGCCTGGAGCTGTTGTTGCAGGAATTGCAGAACAAGGTCGACG AAAACCCGGACCTGACCCGCTTCAAGGACCAGATTCTGTTCGAGATCACTCAGGACGGATTGCGGATCCAGATCATGGATGCGGCCAATCGCCCAATGTT CGCCTTGGGCAGTGCGCAGCTGCAGCCCTATTTCGAAGATATCCTGCTGGCGATGGCCGATACCATTCGCGCGGTACCGAACAAGATCAGCGTCAGTGGT CACACCGACGCCAAGCCTTACTCGGGGCAGGGCGATTTCGGCAATTGGGAGCTGTCGGCGGGCCGCGCCAACGCGGCACGGCGCACGCTGGTCGCTGGCG GTTATCCGGAAGACCAGATCGCCCGCGTGGTGGGCTATGCGTCGTCGGCCTTGTTCGATCGGGAAAACCCGTTGAATCCGGTCAATCGGCGCATCGACAT TCTGGTGCTGACCAAGAAAGCGCAGCGCAACATTGAGGGTGAACAATCGGATGCGGCAGATCAGCCGGACAGTCCGGAGCAAGCGTCCACAACCGGAGCG CCGTTGCCTGCGCCTGAGGTATTGCCTCCGGCAGAATTGCGCAAGCGATTGAATATCTTCGAGGACGGTGTGCTGCAGTTCGACCAGCCCGACGGCAATT GA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CGCCGCGCCTTGGCGTTCACGGCTGGCTCAGGAAGCGAATGACTAATAGTCGGCTTCTGGCAGGCTGCTGATGATATGCCGATAGCTGGCCATGCGCTGC GGCTGTATCTGCCCTTGCTCCAGTGCTTTCAATAGCGCACAGCCCGGCTCGCGGTCGTGCCTGCAATCGCGGAAGCGACAATGTCCCAGCAACTCCTGAA ACTCGATGAAGCCGGCTTCCACATCGGCGCGGCTGACGTGGCCCAGGCCGAATTCGCGAATGCCTGGTGAGTCGATCAGCTCACCACCGCCTGGAAAGTG GAAGAGGCGGGCAGTGGTAGTGGTATGGGTGCCCTTACCGGTCATTTCCGACAGTGCTCCGACGCGCGTATCGACACCCGGCAGCAGGCTGTTGACCAGC GACGATTTGCCCACTCCGGACTGGCCGACGAACACACTGACATGACCGTCGAGCCGCGCTTGCAGTGCCTCCATGCCCGCGCCGTCATGCGCGGACACTT
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Amino Acid Sequence |
>flagellar motor protein MotB
MDNTQPIIIKRVKKSAAGHHGGAWKIAFADFATAMMAFFLVMWLMSSATPEQKRAISGYFQDPIGFTESASPHVIDLGGTPTPSPDRTLNEEVDPAIQQS ESKIDADQAETFAEQLERERLELLLQELQNKVDENPDLTRFKDQILFEITQDGLRIQIMDAANRPMFALGSAQLQPYFEDILLAMADTIRAVPNKISVSG HTDAKPYSGQGDFGNWELSAGRANAARRTLVAGGYPEDQIARVVGYASSALFDRENPLNPVNRRIDILVLTKKAQRNIEGEQSDAADQPDSPEQASTTGA PLPAPEVLPPAELRKRLNIFEDGVLQFDQPDGN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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