Strain | Pseudomonas stutzeri strain NT0128 259_250415_42058266_86____176, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
ATTCGCCTGGCCATTTTCGACGTCGATGGCGTGCTCACGGACGGCAAGTTGTACTTTTTAGTCGACGGTAGCGAATTCAAGACGTTCAACACCCTTGATG GTCACGGGATCAAGATGCTGATCAATTCGGGTGTGCGTACCGCTATCATCAGCGGCCGCAAGACGCCGGTCGTCGAGCGCCGAGCGCAGAACCTCGGTAT CCAGCACCTGTATCAGGGCCGCGAAGACAAACTGGTGGTCCTCGATGAGTTACTCACCGAGCTCGGACTCGACTACGCTGAGGTCGCCTACCTGGGCGAC GATCTGCCCGATCTGCCGGTAATCCGCCGTGTCGGCCTGGGCATGGCGGTGGCCAGCGCCGATGCCTTCGTCCGCCAGCATGCGCACGGGGTCACCGCCG CCCGCGGTGGCGAGGGCGCGGCACGAGAGTTCTGCGAACTGATCATGCGCGCCCAGGGCAGTCTCGATGCAGCCCAGGCCGCCTACCTCTAGAGGTTTCA
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DNA Sequence for Gene |
>UF78_RS17555
ATGCTGAGCAGAATCCGTCTTCCTGTCATCCTGTTGCTGATCGCCCTGCTGCTGATCGCAGTCGGCTACTGGAACATCCGCCCCGAGAGCTTCATGCAGG AAGCTCCCGTGAGCCAGGGCGGCGAAACGCCGATCGATTTCTATGTCGTCAACTCTCGGACCATTCAGTATCAGCCAGACGGCAAGCGCAATTACGAGCT GTCCGCCGAGAAGGTGGAGCACATCAAGGCCAGTGACGTCAGCCTGCTGACTCGCCCCGACCTTCATTCCTACAGGGGCTCCGATCTGCCGTGGCATGTG ACCAGTGAGCGCGGTGAAGTCGGCCCACAGGGCGAGGAAGTCGAGTTGATCGACAACGTCAGGGTCGAGCGGAACGACGCCAAGGGACGCCCTACGATTA TCACTTCCAGTCGAATGACGGTGTTTCCCGAGAAGGATTACGCCGAGACCCGCCAACCCGTTAGAATCGTCGCCGCAAACGGCGTAACGACCGCGACGGG TATGAAAGCGTACCTGAACGAAGGCAGGATGCTCCTGCTATCCAATGTAAGAGGCCAGCATGAGCTGCGTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GACCCTTCCTTTCCTGCTCGGTGTGAGCATTTTCCTGCTCGGCGCGAACGCCCATGCGCTCCCCGAGGACCGCAATCAGCCGATCCGCGTGCAGGCCGAT ACAGCGGAACTGGACGATCGACAGGGCGTTGCCGTGTATCGCGGCGACGTGGTCATCACCCAAGGCACCATGAAGATCACTGGCAATACGGTAACCATCA CTCAGAACAAGAACGGTGATGTCGAGGTCTTCACCTCCATCGGCAAGCCCGCGTACTACGAGCAGAAGCCGGCAGCGGACAAGGAAATCGTCAAGGCGTA TGGCCTGACCATCCAGTATTTCGCCGCCAACGAACGCATCGTGCTGATCGACCAGGCGAAAGTCGTGCAGGAAGGCAATACCTTCGAAGGCGAGAAAATC GTCTATGACACACAGCGGCAGATCGTCAATGCCGGCCGCGCCACCGATACCGATGTCACTACGCCGCGCCCTCGCGTGGACATGGTCATTCAGCCGCGCA
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Amino Acid Sequence |
>LPS ABC transporter permease
MLSRIRLPVILLLIALLLIAVGYWNIRPESFMQEAPVSQGGETPIDFYVVNSRTIQYQPDGKRNYELSAEKVEHIKASDVSLLTRPDLHSYRGSDLPWHV TSERGEVGPQGEEVELIDNVRVERNDAKGRPTIITSSRMTVFPEKDYAETRQPVRIVAANGVTTATGMKAYLNEGRMLLLSNVRGQHELR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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