Pseudomonas stutzeri NT0128, UF78_RS08110
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri strain NT0128 251_395628_52534932_28____91, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTTGTCAAGAAGTGATGTTGAAGGTGTTGTACGGCTTGAAGAACTTTGAAGGCAAATCGAAGTTCAAGACATGGCTATACAGCATTACGTACAACGAATG TATTACGCAGTATCGCAAAGAACGCCGTAAGCGACGGTTACTTGATGCGCTGAGCCTCGATCCGGTCGAGGAGGCTGTCGAGGAAAAGACGCCCAACACC GAGGAAAAGGCGGGGCTAGACAAGTGGCTGGTCCATGTGAATCAGATTGATCGGGAGATACTTGTGCTGCGCTTTGTCGCGGAGCTGGAATTTCAAGAAA TCGCCGACATCATGCATATGGGCCTAAGCGCAACGAAGATGCGATACAAGCGTGCACTGGATAAACTGCGGGAAAAATTTTCGGGAATTGCTGAAACTTA ATGGCAACAAACTGTCTTAGTGATAGCGAACAGCTTGGGCTTAGAGACAGCCGGTTTCCTTAGATTGTTCTGATACTCACCACCAGATGGGGATTTACGG
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| DNA Sequence for Gene |
>UF78_RS08110
ATGAAACTTAAAAACACCTTGGGCGTTGTAATTGGCTCTATGGTTGCTGCTACTTCTCTTAGCGCGCTCGCCCAGGGCCAGGGCGCTGTAGAGGTGGAAG CATTCGGCAAGCATTACTTCTCAGACAGCTCCCGCGGCTTCGAAGACGAAGGCGAGCTCTATGGCGCTGGCGCCAGCTATTTTCTCACCGATGATGTTTC CTTGGGCCTGTCCTACGGCGAATATCACGACGTCACTTCCGACGAGCCGGTAGCGGGCGGCGGCCACAAGAACATCAAGGGAAGCCTGACTTCTCTTGAT GCGGCCTACCACTTCGGCCAGCCAGGCGTAGGTCTGCGTCCTTACGTTTCCGCCGGCATGGCTCACCAGAGCATCGGCCAGGCAGCACGTAGCGGTCGTG ACCACAGCACCTTTGCTAACATTGGCGCGGGTCTGAAGTATTACTTCACCGAAAACTTCTTTGCCAAGGCCAGCGTTGATGGCATGCACAACATCGATGC CGGCGACAGCGAGTGGATGGCTGGCGTGGGTGTAGGCCTGAACTTCGGTGGCGGCGCACGGCAGCAGGTTGCACAGGTCGAGCCGACTCCTGAGCCAGCA CCGGCTCCAATCGTCGATAACGAGCCAGAGCCGGAACCGGAGCTGGTCCGTGTCGAGCTGGACGTCAAGTTCGACTTCGACAAGGCGCGCGTTCGCGAAG AAAGCTACAGCGACATCAAGAACCTGGCTGACTTCATGCAGCAGTACCCGCAGACCAGCACCACCGTTGAAGGTCACACTGACTCGGTGGGTACTGACCA ATACAACCAGCGTCTGTCCGAGCGTCGCGCTCAGGCTGTTCGCGAAGTGCTGGTCAACCAGTACGGCGTAGAAAGCCAGCGTGTTGATTCGGTCGGCTAC GGCGAATCCCGCCCGGTTGCTGACAACAGCACCGAAGAAGGCCGTCAGATCAACCGCCGTGTAGAGGCAGAGGTCGAAGCACAGGTTCGTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGCACCTTGTTTCGCGAGGCTCGCCAGCGGTGCCATTAGGCATCAGAGCCTCTGCTTTTAAGAATCCGATGTCAGGCGACTGGCATCGGATTTTTTTG CCTTTCCGAAGCCTCTTGTCGAATCGAATAGCGCTAGTGTCTATGCCGAATGCGGATTCACGAACGATATTCGATTTGGACGGCGGACGCGGAGAGCTGT ACAGCCACTAGGGCGGGGTCTAGACGATGCCTGCATATGAGAAGAACTGGTAAGGCGCTTAGCGAGGCCATCAGACGCATCCAGAAGGCGCTCGCCAGGG TCTGGCAAAGTGTTGAGTCGTATATGACGGACAAGGGGAGAGGTTAGCCCCATCAGGACTCAAGGCCGACGCGAACACCTAACGAAAAGTTGAGAAATGA GACATACAAAATGTCGATGCCTATGCCACCGGCTTAGCGCTGCGCAGGGTTGACCTGGTTAGCCAGGGCGTGGATGGTGGCGATGTATACCTCGGGAGAG
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| Amino Acid Sequence |
>porin
MKLKNTLGVVIGSMVAATSLSALAQGQGAVEVEAFGKHYFSDSSRGFEDEGELYGAGASYFLTDDVSLGLSYGEYHDVTSDEPVAGGGHKNIKGSLTSLD AAYHFGQPGVGLRPYVSAGMAHQSIGQAARSGRDHSTFANIGAGLKYYFTENFFAKASVDGMHNIDAGDSEWMAGVGVGLNFGGGARQQVAQVEPTPEPA PAPIVDNEPEPEPELVRVELDVKFDFDKARVREESYSDIKNLADFMQQYPQTSTTVEGHTDSVGTDQYNQRLSERRAQAVREVLVNQYGVESQRVDSVGY GESRPVADNSTEEGRQINRRVEAEVEAQVR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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