Pseudomonas stutzeri NT0128, UF78_RS09560
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri strain NT0128 250_340054_43730908_28____227, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTGATGCACCACTGAGCATTGTTCGGCGACCAGATGCCCACCCGTTCGCCCGGCTGCAGACCGAGCGCCAGCAGTCCCCTTGCGCAGCGGTCTACCTCAT CGGACAGCTGGGCCCAGGTGTAGCGCAAGTTCTGATGGCGAACGACCAGGGCCTCACGCTCGGCGAACCGCTCGACTGCCCGATCGAACGCCGCACCGAT GGTCATCGCCAACAGGGGTTTGGTCTGCGGACCGCAGGTGTAACTCGGAAGACTCATGTCGGACTCCTCAGTCTTATGTTTGTTATGAGGCCTTGCCGTC CGGGGATATCGATGAGTTGACAGTTATCCCGGCGTTTGATTACGTTAACGTAAAGGTAACAGCGTGACAACCCACCGCACCCTACATCTAAAGTCGCTGT TGGAGCGTGGTGAGCGAACAGGCCGGACGACAGGCGTTATCAACGTTTCGCGACGTCCGGCAGTCGAATCAGAACAACTACAAAACAGAACAGGTGGCAC
|
|
| DNA Sequence for Gene |
>UF78_RS09560
ATGAACTACTCCGGCCTCAACTTCGCCCTCGGTGAAACCGTCGACATGCTCCGCGACCAGGTGCGCGGTTTCGTGGCTGACGAGCTGGCGCCCCGCGCCG AAGCCATCGACCGTGACAACCTCTTCCCCAGTGACATGTGGCGCAAGTTCGGCGACATGGGTCTGCTCGGTATCACCATAGACGAGGAATTCGGCGGCGC TGGCATGGGTTATCTGGCGCACGTCATTGCCATCGAGGAGATCAGCCGCGGCTCGGCTTCGGTTGGACTCTCGTACGGTGCGCATTCGAACCTCTGCGTC AACCAGATCAACCGCAACGGCACACCCGAGCAGAAGGCCAAGTACCTGCCCAAGCTCGTTTCAGGCGAACACGTCGGCGCCCTGGCGATGAGCGAGCCGA ATGCCGGCTCCGACGTGGTCTCGATGAAGCTGCGTGCAGACCGCAAGGGCGATCGCTTCGTGCTCAATGGCAGCAAGACCTGGATCACCAACGGCCCGGA CGCCAACACCTACGTGATCTATGCCAAGACCGACCTGGACAGAGGCGCCCACGGCATCACTGCGTTCATCGTCGAGCGTGACTGGAAGGGATTCTCGCGT GGGAACAAGTTCGACAAGCTCGGCATGCGCGGCTCCAACACCTGCGAGCTGTTCTTCGATGACGTCGAGGTGCCGGAAGAGAACGTGCTGGGCGTCGAGA ACGGCGGCGTGAAGGTACTGATGAGTGGGCTGGACTACGAACGCGTGGTACTGGCCGGCGGCCCGGTCGGAATCATGCAGGCCTGCCTTGATGTGGTCGT GCCCTATATCCACGACCGCAAGCAATTCGGCCAGAGCATCGGCGAATTTCAGTTCATCCAGGGCAAGGTAGCCGACATGTACACCCAGCTCAATGCCAGC CGCGCCTATCTCTACACCGTGGCGCAGGCCTGCGACCGCGGTGAAACCACCCGCAAGGATGCCGCTGGAGTGATCCTCTACACCGCCGAAGCGGCAACGC AAATGGCCTTGCAGGCCATCCAGATCCTCGGCGGCAACGGCTACATCAACGAATTTCCCACTGGCCGACTGCTGCGCGACGCCAAACTCTACGAAATCGG CGCCGGTACCAGTGAGATTCGCCGGATGCTGATCGGCCGCGAGCTGTACAACGAAACCAAATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GTTCGCCGAATAACGGTGGGCTGAAGCGGAACGTCGCTCAGCCCACGCTACGCAAGATATTCAATTCGGAGTGAGCCGCATGGCTATCCTGAATACCCAG ATCAACACCCGCTCCCCCGAATTCGCCGCCAATCGCGACGCTATGCTCGAGCAGGTGGAAAGCCTCCGCACCCTGCTCGGCCGTGTCAGTGAAGGCGGTG GCGAGAAGGCCCAGCAGCGTCACATCGCCCGCGGCAAGTTGCTGGTACGCGACCGCATCAATGCCCTCCTCGACCCCGGTTCGGCGTTTCTCGAAGTCGC GCCGCTGGCGGCTTACGAGGTTTACGGCGAGGACGTTGCCGCCGCTGGCGTGGTCGCCGGCATCGGGCGCGTCGAAGGCGTCGAATGCATGGTCATCGCC AACGACGCCACGGTAAAAGGCGGCAGCTACTACCCATTGACCGTGAAGAAACACCTGCGCGCCCAGGCCATCGCTCAACAGAACCGCTTGCCTTGCATCT
|
|
| Amino Acid Sequence |
>isovaleryl-CoA dehydrogenase
MNYSGLNFALGETVDMLRDQVRGFVADELAPRAEAIDRDNLFPSDMWRKFGDMGLLGITIDEEFGGAGMGYLAHVIAIEEISRGSASVGLSYGAHSNLCV NQINRNGTPEQKAKYLPKLVSGEHVGALAMSEPNAGSDVVSMKLRADRKGDRFVLNGSKTWITNGPDANTYVIYAKTDLDRGAHGITAFIVERDWKGFSR GNKFDKLGMRGSNTCELFFDDVEVPEENVLGVENGGVKVLMSGLDYERVVLAGGPVGIMQACLDVVVPYIHDRKQFGQSIGEFQFIQGKVADMYTQLNAS RAYLYTVAQACDRGETTRKDAAGVILYTAEAATQMALQAIQILGGNGYINEFPTGRLLRDAKLYEIGAGTSEIRRMLIGRELYNETK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|