Pseudomonas stutzeri NT0128, UF78_RS05065 (sbcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri strain NT0128 249_429018_65821923_23____28, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CATTGCACGACGAACAGCAGCAGGGCGCCAGCGCCTATGCCAAACGTGCCTAACGAGCCGAGACCCAGCGCCAGGGTCAGAAATAGCGCGACCCGAATCA GCAGGTCCAGGGCGAACGCCAGAGCGCGAGGCACGAGGCCGGCCGGACGAAGCACGAGATCAATACCCTCCGGCGTTTCGACCCTGTGCGTATTGTCCAG CGGTGCTGTTAGAGCGGAAGGCAATGGTTGTGCTCGACGATCGATCTGGTGGGCTGGTGCGAGGCTGCTGCTCATGGCCGATCAACCGATCGGGCGCGTT GGCCAGGCGATATCGCGGCTATGTAATCATCGAACGTGGTTTTCGGCCAGAACCTGCTCGGCATTTTCAATCGAAATGCCATCATTCATACGCTGTGATC GCCCCGTTGCGCGGACCTGTCGCACAAGGAGTCGGGCGATGCGGCCGGCGGTCGTTCAAGCGCGTTAGACTGGTGTGCAAAGGCCGAGAGGGAGGCTCCC
|
|
| DNA Sequence for Gene |
>UF78_RS05065
|sbcB
GTGACATCCAGCATCTTCTGGTACGACTTTGAAACCACTGGCATCTCGCCGCGTTGCGACCGACCGCTGCAGGTCGCCGGGATCCGCACCAACGAGGCGT TGGAGGAAATTGGCGAGCCGCTGAATATTTACTGCCGGCTCAGCGACGACATCCTGCCGCACCCGGCCGCTTGCCTGGTGACTGGCATTACTCCGGCCAC CCTGACTGAAAAGGGGTTATGCGAAGCGGAGTTCATCGCTCGGCTGCATCAGGAACTGTCACAACCGGGCACCTGTAGCGCTGGCTATAACACCTTGCGT TTCGATGATGAGGTGCTGCGCTACAGCCTGTACCGCAATTTCTTCGATCCCTATGCGCGCGAGTGGCAGGGTGGCAATAGTCGCTGGGATCTCATCGATC TGGTCCGCACCGCTTATGCGTTGCGTCCCGAGGGGCTGGTTTGGCCTGAGGAAGACGGCCGCGTGACGCTCAAGCTGGAGCGTCTCAGTGTCGCCAACGG GCTCGAGCATTTGCAGGCGCACGACGCCCTGTCGGACGTGCGGGCGACCATTGCGCTGGCTCGATTGATACGGGAACGCCAGCCGAGGCTGTATGACTAC CTGTACAAACTGCGGCGTAAGAACGCGGTAGTCGAACAGGTCGAGATTTTGAAACCAATGGTGCATGTCTCCGGGCGCTTCTCCGCTGCGCGGCACTATT TGTCCGTGGTGCTGCCACTGGCCTGGCATCCGCGCAATCGCAACGCACTGATCGTCTGCGACCTCAATGCCGAATGCTCGCCGCTATGGGAGGACACGGC CGAAGATCTCCGCGAGCGGCTGTATACCCGCCGTGAAGATCTCGGTGAGAAGCTGCCGACTCCGTTGAAACTGGTGCACGTCAATCGCTGCCCGGTACTT GTACCGATGAATGTCTTACGCAAGTCGGATATCGAGCGATTGAATCTGGATTTGCAATGTTGCGAGTCCAGGGCAAGCGATCTACGTGGTCGACAAGCAG AATGGAGCGCGAAACTTGCTGACGTCTATCAGGAGCAGGCGTTCACCGGCTTGTCGGATCCGGAACAGCAACTCTATGAAGGCTTTCTGGGTGAGCGAGA TCGCCGGTTATGCGAGCAAGTCAGAAGCTTTGTACCCTCATCTGGTTCGAGTGGAGTGCCGTCGTTTGATGATGCCCGTCTACCGGAACTGCATTTTCGT TACCGTGCTCGGAATTTTCCCGAATGCCTTTCGGCTGCGGAACAACTGCAGTGGCAGGAGTTTTGTCGGCAGCGTTTAACCGCGCCCGAGTTTGGCGCGC CAAACACCTTGGATCAGTTCGAGAGTTCGCTGCAGGCATTACTGGCTTCAGCCAGTTCGAACCAGATGCAGCTACTGCAGCAATGGGCCGTGCATGCCCG TGGTCTGCGTGAGCGCTACATTCGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCTTCTTATCAAACGCCCGCAAAAAAGCCATCTGACGCGGCATGCTCGGCATGCAGCGTCGGATGGCTTTAGGTCCCGCGCCGAAATTTAACCGAGCAAG GTGGCCCAGCTTTCAACTTCGTCGGAACCCCACTGGGCTTTCCATTCTTTCAGAGTCTTGTGATTGCCACCTTTGGTTTCAATCACTTCGCCGTTATGTG GGTTCTTGTACTGCTTTACGCGGCGCGCGCGCTTGGTAGCTGCCGGCGTCTTTGCGGTGCGTTGTGTTTTGCTATTTCTAGCGTCCGGATCGAGCAGGGC GATGATATCGCGAAGCGATTTTTGATATTCACCCATCAGTTCGCGCAGTTTGCCTTCGAACTCAAGCTCTTTTTTTAGCTTGTCATCTGCAGAAAGAGAC TTCAGGCGTTCCTGGAGCTCCTTGATAGCTTCTTCTGTGGCGCGGTATTCATTGATTAGCGACATGTCACTTCCTTGGTATAGGTTGAACGCAAGTGTTA
|
|
| Amino Acid Sequence |
>exonuclease I
MTSSIFWYDFETTGISPRCDRPLQVAGIRTNEALEEIGEPLNIYCRLSDDILPHPAACLVTGITPATLTEKGLCEAEFIARLHQELSQPGTCSAGYNTLR FDDEVLRYSLYRNFFDPYAREWQGGNSRWDLIDLVRTAYALRPEGLVWPEEDGRVTLKLERLSVANGLEHLQAHDALSDVRATIALARLIRERQPRLYDY LYKLRRKNAVVEQVEILKPMVHVSGRFSAARHYLSVVLPLAWHPRNRNALIVCDLNAECSPLWEDTAEDLRERLYTRREDLGEKLPTPLKLVHVNRCPVL VPMNVLRKSDIERLNLDLQCCESRASDLRGRQAEWSAKLADVYQEQAFTGLSDPEQQLYEGFLGERDRRLCEQVRSFVPSSGSSGVPSFDDARLPELHFR YRARNFPECLSAAEQLQWQEFCRQRLTAPEFGAPNTLDQFESSLQALLASASSNQMQLLQQWAVHARGLRERYIR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|