Pseudomonas stutzeri NT0124, TK79_RS15275 (sbcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri strain NT0124 212_460558_58553450_170_184, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCGGCCCTGATTCAGAACTTCGAAGAGCACCATGTACCACCACTGGACGAGAAACAGCAGCAGTGCGCCCAGCCCCATGCCGAACTTGCCCAGCAGTCC GAGCGTAAAGAAGAGGATCAGTAGCAGGGCGCCGCGAATACCCAGGTCGATGGTGAAGGCGAGCGCGCGCGGAACGAGACCGGCCGGGCGCAACACCAGG TCGATGCCCTCTGGGGTTTCCACGCGATGGCTGGTGTCGAGCAGGGCTTGGCGGTCGATGTTCGATGGCAAGGGCAAGGTCGTCTAGGGTCAGGCAGAAG CTGATGCTATGCGGCAAGCACGGCTGCGGCAATGCGCGCGATGGTCAGATGACCCGCCGGGCGCCGAAAGTGGGACGGATTATGGCGAAATGCCTGCTTC CTTGCAGGATGCCGTTCGCAGAGCGGGGCACCTTCCTGACTCACCGCGATGGCCATGTCGCAGCTGTTAGACTGCTGTGCTGATCGAGAAGGACTCTCCC
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| DNA Sequence for Gene |
>TK79_RS15275
|sbcB
GTGACTCCAAGCATCTTTTGGTACGACTTCGAAACCACAGGCATATCGCCCAGCCGCGACCGCCCCTTGCAGGTTGCCGGTATCCGCACCAACGAGGCGC TCGAGGAAATCGGCGAGCCGCTGAACATCTACTGTCGTCCCGGCGACGACATCCTTCCCCATCCCGCCGCGTGCCTGGTCACGGGGATCACGCCTGCAGT TCTGCAGCAGAAGGGGATGTGCGAGGCCCAGTTCGTTCATCATCTGCATCGGGAATTGTCGACTCCCGGAACCTGCGGCGCCGGCTACAACAGCCTGCGT TTCGACGACGAAGTGACCCGCTACAGCCTGTACCGCAATTTCTACGATCCGTATGCACGCGAATGGCAGGGCGGCAACAGCCGTTGGGATCTGATCGATC TGGTGCGTACCGCCTATGCGCTGCGCCCGGAAGGAATTGGCTGGCCGGAAGACGACGGGCGGGTGACGCTCAAGCTCGAGCGTTTGAGTGCCGCCAATGG GCTGGAACATCTGAACGCCCACGACGCGCTGTCCGATGTGCGCGCCACCATTGGCCTCGCCAGGCTCATTCGTGAGCGGCAGCCGCGTCTGTACGAATAT CTCTTCAATCTGCGTCGCAAACATGCGGTGCTCGAGCAGGTCACCCTGCTGGAGCCGCTGGTGCACGTGTCCGGACGCTTCTCGGCTGCCCGGCATTTCC TCTCCGTGGTGCTGCCGCTGGCCTGGCATCCGCGCAACCGCAATGCGCTGATCGTTTGCGATCTGCAAGCCGAGGTGCGGCCGTTATGGCTGGAAAGCGC GGAAACGCTGCGACAGCGGCTCTACACGCGTCGCGACGAGCTGGCCGAGGGCGAGTTACCGGTCCCGCTGAAGCTCGTGCACATCAACAAGTGCCCGGTC CTGGCGCCGCTCAAGGTCTTGCGCGAGGCGGATATCCAGCGTCTGGAGCTGGACTTGCCTGCGTGCCACGAACGTGCTGACGCGCTACGCGAACAGCGCC ACGTGTGGAGCCCAAAGCTGGACGAGGTGTACCGCGAAGAGGGGTTCATCGGTGTGGACGATCCGGAACAGCAACTCTATGACGGCTTTCTGGGCGAGCG CGATCGGCGGCTGTGCGATCGGATTCGCGAGATGGCGCCGGCAGAGCTCGCTCGGCAACAGTGCCACTTCGATGATGTACGGTTAGAGGAATTGCTGTTC CGTTATCGCGCGCGCAACTTTCCGGAAGCGTTATCGGCTGAAGAGCGGGTGAGGTGGCAACGGTTCTGCCAACAGCGCCTTAGCGGCGAGATAGCCGGCG CGCCCAATACCCTTGCGCAGTTCGAGGCGGATATACAACAGTTCATGCTCACTGCCACCCCGGCGCAGCAGCAGCTATTGCAGCAGTGGCGTGAATACGG GCGCGCCTTGGGTGAGCGTTACGGGTGCAACTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCGTCCGGCCCGGTTGGCTATCGAAAAAGAGCAGCGGCTGTTACGGGTGGGAAGCGCGCAATAAAAAACGCCGCTTGTCGACGTCGATCAATAACGTCG GGAAGCGGCGTTCTTTATAACCCTGGTATTGCTTAGCCCAGAAGAGTGGCCCAGCTTTCCACGGTGTCGGAGCCCCATTGGGCTTTCCATTCTTTCAGCG TCTTGTGGTTGCCACCTTTGGTTTCAATCACTTCACCGCTGTGCGGGTTCTTGTACTGCTTGACGCGACGTGCGCGCTTGCTGGCGGCCGGCGCTTTCGC CGCACGTGGAGTTTTGCTGTTGCGGGAGGCATCCGGATCGAGCAGGGCGATGATGTCGCGCAGCGACTTCTGGTATTCGCCCATGAGTTCGCGCAGCTTG CCTTCGAACTCCAGTTCCTTTTTCAGTTTGTCATCTTCGGAAAGGGACTTCAGTCGCTCCTGAAGTTCCTTGATGGCCTCTTCAGTGGCGCGATACTCGT
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| Amino Acid Sequence |
>exonuclease I
MTPSIFWYDFETTGISPSRDRPLQVAGIRTNEALEEIGEPLNIYCRPGDDILPHPAACLVTGITPAVLQQKGMCEAQFVHHLHRELSTPGTCGAGYNSLR FDDEVTRYSLYRNFYDPYAREWQGGNSRWDLIDLVRTAYALRPEGIGWPEDDGRVTLKLERLSAANGLEHLNAHDALSDVRATIGLARLIRERQPRLYEY LFNLRRKHAVLEQVTLLEPLVHVSGRFSAARHFLSVVLPLAWHPRNRNALIVCDLQAEVRPLWLESAETLRQRLYTRRDELAEGELPVPLKLVHINKCPV LAPLKVLREADIQRLELDLPACHERADALREQRHVWSPKLDEVYREEGFIGVDDPEQQLYDGFLGERDRRLCDRIREMAPAELARQQCHFDDVRLEELLF RYRARNFPEALSAEERVRWQRFCQQRLSGEIAGAPNTLAQFEADIQQFMLTATPAQQQLLQQWREYGRALGERYGCN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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