Pseudomonas stutzeri 19SMN4, UIB01_RS15945

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003724 RNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00661
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pstu03018 RNA degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
MobiDBLite mobidb-lite consensus disorder prediction - - 1 78 -
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 108 315 2.1E-52
CDD cd00268 DEADc - - 100 301 1.09083E-93
Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. IPR023554 ATP-dependent RNA helicase RhlB type 88 470 52.848564
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 314 468 4.9E-47
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 323 432 2.1E-29
CDD cd18787 SF2_C_DEAD - - 312 440 2.71476E-58
PANTHER PTHR47959 ATP-DEPENDENT RNA HELICASE RHLE-RELATED - - 85 473 3.2E-122
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 164 447 8.07E-72
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 113 288 5.8E-48
MobiDBLite mobidb-lite consensus disorder prediction - - 33 50 -
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 76 313 1.1E-74
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 351 432 1.1E-31

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.