Pseudomonas stutzeri 19SMN4, UIB01_RS11030 (ligD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003910 DNA ligase (ATP) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pstu03450 Non-homologous end-joining 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd04862 PaeLigD_Pol_like IPR033651 LigD polymerase domain, PaeLigD-type 579 805 1.34465E-125
MobiDBLite mobidb-lite consensus disorder prediction - - 529 548 -
Gene3D G3DSA:3.30.470.30 DNA ligase/mRNA capping enzyme - - 258 373 1.9E-44
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 419 538 1.46E-28
Gene3D G3DSA:3.30.1490.70 - - - 245 414 1.9E-44
NCBIfam TIGR02778 JCVI: non-homologous end-joining DNA ligase, polymerase domain IPR014145 DNA ligase D, polymerase domain 562 806 2.6E-87
MobiDBLite mobidb-lite consensus disorder prediction - - 199 221 -
NCBIfam TIGR02776 JCVI: DNA ligase D IPR014143 DNA ligase D 246 836 0.0
Gene3D G3DSA:3.90.920.10 DNA primase, PRIM domain - - 569 853 1.8E-97
CDD cd07971 OBF_DNA_ligase_LigD - - 419 535 4.61492E-52
NCBIfam TIGR02777 JCVI: DNA ligase D, 3'-phosphoesterase domain IPR014144 DNA ligase D, 3'-phosphoesterase domain 3 160 1.5E-70
MobiDBLite mobidb-lite consensus disorder prediction - - 529 565 -
Pfam PF01068 ATP dependent DNA ligase domain IPR012310 DNA ligase, ATP-dependent, central 237 416 1.2E-25
Pfam PF04679 ATP dependent DNA ligase C terminal region IPR012309 DNA ligase, ATP-dependent, C-terminal 435 530 7.6E-26
Pfam PF13298 DNA polymerase Ligase (LigD) IPR014144 DNA ligase D, 3'-phosphoesterase domain 37 140 8.3E-39
PANTHER PTHR42705 BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD - - 236 848 3.2E-108
SUPERFAMILY SSF56091 DNA ligase/mRNA capping enzyme, catalytic domain - - 233 416 1.46E-44
CDD cd07906 Adenylation_DNA_ligase_LigD_LigC - - 234 417 3.9903E-75
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 418 538 5.1E-38
NCBIfam TIGR02779 JCVI: non-homologous end-joining DNA ligase, ligase domain IPR014146 DNA ligase D, ligase domain 236 536 3.5E-107

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.