Pseudomonas stutzeri 28a24, CH92_RS08975
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri strain 28a24, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCGACGCGTTTGCCGCCCCATTCAAAATATGTAGTGCCATAAAAAAACCACTACAAAACATTTGACGAACCTTTTTCGTCAGCGCATTATGGCCCCGCTC CCGCTAACCAGGGGCCCTGGCAAGGGTCTCCGGATCGCGCTCAGCCAACCAGCAGAGCCGTTCCGTGACTGTACTGCCCACAAGGCGGACTGACGAGGTT GCGACTGGAACGAGTCGTCCTGAGGGACGGGGAAGCGATTAACGCATCAGCTCGAGACGTCAGTACTGTCGTTACGCAATGGCCGTGTGTCACTGCGTGT TGGAATGCCACGAATCATTCCACAGTTTGCCAACTTCTCTTGCGGTCGTGACTGCACACCCTCCTCTCCTTGGTTCAATCCTCGTCCCGGTCGGTATTTC GACGCTCTGCCGCGTGTTGCCCGCATGATCAGCGTAAGCACGTAGGTTTCGGTGGGAAAGTCGGTGCTCAACCAAACACGAATTTTTTGAAGGATTGACC
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| DNA Sequence for Gene |
>CH92_RS08975
ATGTCCGCTTATCAAAACGACATCAAGGCCGTTGCCGCTCTGAAAGAAGTAGCTGGAAGCAGTTGGAGCGCTATTAACCCTGAATCCGTAGCTCGTATGC GCGCCCAGAACCGCTTCAAGACCGGCCTGGAAATTGCTCAATATACTGCCGACATCATGCGCAAAGACATGGCCGAATACGATGCCGATTCGTCCGTTTA CACTCAGTCGCTGGGCTGCTGGCACGGCTTCATTGGCCAGCAGAAGCTGATCTCCATCAAAAAGCATTTGAAAACGACCAACAAGCGCTACCTCTATCTG TCGGGCTGGATGGTTGCCGCCCTGCGCTCTGAGTTCGGCCCGTTGCCTGACCAGTCGATGCACGAGAAGACTGCCGTTTCCAACCTGATCGAAGAGCTGT ACACCTTTTTGCGTCAGGCCGACTCACGCGAGCTGGACCTGCTCTTCACCGCCCAGGATGCTGCCCGCGAGGCCGGAGACAGCGCCAAGGTTGCTGAGAT TCAGAACCAGATCGACAACTATGAAACTCACATCGTCCCGATCATTGCCGACATCGACGCCGGCTTCGGTAATCCGGAAGCGACCTACCTGCTAGCCAAG CGCATGATCGAAGCAGGCGCTTGCTGCATCCAGATCGAGAACCAGGTGTCTGACGAGAAGCAGTGCGGCCACCAGGACGGCAAAGTGACCGTTCCCCACG CCGATTTCCTGGCGAAGATCGCAGCCGTCCGCTATGCCTTTCTCGAACTGGGCATCGACAATGGTGTGATCGTTGCACGTACCGATTCCCTGGGTGCCGG CCTGACTAAGCAGATTGCAGTGACCAAGGAGCCGGGCGACCTGGGCGACCTATACAACTCGTTCCTGGATTGCGAACAAATCTCCGAAGCCGAGCTGGGC AACGGCGACGTTGTGATCAAGCGCGAAGGTAAATTGCTGCGCCCCAAGCGCCTGCCGAGCAACCTGTTCCAGTTCCGCAAGGGTACGGGTGAAGATCGCT GCGTGCTGGATTGCATCACCTCGCTGCAGAACGGCGCCGATCTGCTGTGGATCGAAACCGAGAAACCGCACGTGGGCCAGATCAAGGCCATGGTCGATCG CATCCGTGAAGTCATTCCGAATGCCAAGCTGGTTTACAACAACAGCCCGTCGTTCAACTGGACGCTGAACTTCCGCCAGCAAGTGTTCGATGCCATGGTT GCCGAAGGCAAGGACGTTTCCGCCTACGATCGCGCCAAGCTGATGAGCGTCGATTACGACGAAACCGAGCTGGCCACCCGCGCAGACGAAATGATCCGTA CCTTCCAGCGCGACGGTGCCGCACAGGCTGGCATCTTCCATCACCTGATCACGCTGCCGACCTACCACACCGCCGCGCTGTCCACCGACAACCTGGCCAA GGGTTACTTTGCAGAAGAAGGCATGCTTGCCTACGTCAAGGGCGTGCAGCGCCAAGAGCTACGTCAGGGCATCGCCTGCGTGAAGCACCAGAACATGGCT GGCTCCGACATTGGCGACAACCACAAGGAGTACTTCGCTGGCGAAGCTGCTCTGAAGGCTAGCGGTAAAGACAACACCATGAACCAGTTCCACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAACTGGCACGGCCTGGGCATAACCCGGGACGGGGGAGACTTAGATGCTTCGGCATCTACCGAAAGCTGCGCCCTTACCGGCGCAGCTTTTTTATTTCTG CCGGTCTGTGTTCGGCCGGATACTTCCCAAGTTTATCGCTGCACGATGCATGCCTTTTAGGTTAATCAGCGCCATAAGGGTTATGTAGTTGAAGGTAATA GAACGTAGTATCGGCAAGATCAGCGAAAACCTTCGTGATAAAGCCGGTAGGCTGACTGCGCGAATTCTGTCAAATCGGCTACTTGCCCTCTCATCACCAC CACGAACATAAGCGTCATATGGAAGCGGACTAGAAGAACGCAGAGCACCGAGAGACCCGGACGTCATGTGTGCCAGCTCCGTAGTTGCACTTCAGTCAGA CGTAGAATCCGAGCCCAATCGGCTGGCCGCCGACGCTCTTCACTTGCTCGCCTTTGAAGGGTTGTTTACCTATGACGTGAAGCGTCCAGACCACACCATA
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| Amino Acid Sequence |
>isocitrate lyase
MSAYQNDIKAVAALKEVAGSSWSAINPESVARMRAQNRFKTGLEIAQYTADIMRKDMAEYDADSSVYTQSLGCWHGFIGQQKLISIKKHLKTTNKRYLYL SGWMVAALRSEFGPLPDQSMHEKTAVSNLIEELYTFLRQADSRELDLLFTAQDAAREAGDSAKVAEIQNQIDNYETHIVPIIADIDAGFGNPEATYLLAK RMIEAGACCIQIENQVSDEKQCGHQDGKVTVPHADFLAKIAAVRYAFLELGIDNGVIVARTDSLGAGLTKQIAVTKEPGDLGDLYNSFLDCEQISEAELG NGDVVIKREGKLLRPKRLPSNLFQFRKGTGEDRCVLDCITSLQNGADLLWIETEKPHVGQIKAMVDRIREVIPNAKLVYNNSPSFNWTLNFRQQVFDAMV AEGKDVSAYDRAKLMSVDYDETELATRADEMIRTFQRDGAAQAGIFHHLITLPTYHTAALSTDNLAKGYFAEEGMLAYVKGVQRQELRQGIACVKHQNMA GSDIGDNHKEYFAGEAALKASGKDNTMNQFH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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