Strain | Pseudomonas stutzeri strain 28a24, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
CGGTGGCCGACGGATCGTTCGGATATATCGGGCTGCACGTGGAAGCTGACCAGCATTCCATGCCTTACACGTGACGTCTGGCCTGCCTGAGACAGCGTCA GAGGGTTCCGTGCGGTGATCACCGCCCCGGACGTCAGCAGTTCTTCGATATGTTTGCGTAGCGCATGAAACTGCCGCTTGTCGTCTCGATATTCCGGCAT TGATGCGGCTCCGTCCGTGAAAGACGGACGGGATTCTAACAATCTTCAGCTGATTTACATATCAAAATGACATCATTCGTTGTTGCAGAATAATGCCGTA CTTCGGTGGCGATTCGGTCTCTGGCAATCTCCGAATGGTTGATTTGCCACGCCTTGGGTCCGTGCCGAACGTATCTCGACAAATGGCTGCGTTGCGATCG GTAGATGAACGATAATCACGCTCGCACCGTGGTTAGCGTTAAAAATTTGCAGTTATGTCAGAGCGGTGCCAATGAGCCGTATTCGGTGCAGAGCCAAGGA
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DNA Sequence for Gene |
>CH92_RS07450
ATCCCACCCGTTAACACTTCACGCAAAATCATCCATGTCGATTGCGACTGCTTCTACGCAGCCATCGAAATGCGTGACGACCCCAGCCTCGCGAATCGGC CCATCGCGGTAGGTGGGCTCGCCGATCGTCGTGGTGTCATAGCCACCTGCAATTACGAAGCACGTGCCTATGGAGTGCGCTCGGCAATGGCGTCGGGGCA CGCGTTGAAGCTTTGCCCGGATCTGCTGATCCTGCGGCCCCGCATGGACGCCTACAAGGAAGCTTCGCGCGAGATCCATGGGATCTTTCGGACCTATACC GATCTGATCGAACCCCTATCCCTCGATGAGGCCTACCTTGACGTGAGTGCCTGCAAGCATTTCGCCGGTAGCGCCACGCGTATTGCCCAGGATATCCGTC GACGGGTCTGGCAACAGCTGCGTATCACGGTGTCGGCGGGCGTTGCGCCAAACAAGTTTCTGGCCAAGATCGCCAGTGATTGGAAAAAGCCGGACGGGCT TTTCGTGATCACCCCGGATCAGGTTGACGACTTCGTGTTGGCACTGCCGGTCACCAAGCTGCATGGGGTCGGCCGAGTCACCGCTGACAAGCTGAAGCGG CTGGGCATTCACACCTGCGCTGATCTACGCACCTGGAAACGCCTGGATCTGGTTCGGGACTTCGGCTCGTTCGGTGAAAGGCTGTGGGGGCTGGCGCATG GAATCGACGAGCGTCTGGTTCAGATCGAGAGCCGGCGCCAATCGGTGAGCGTCGAGAACACCTACGATCGCGACTTGCCGGACCTCGCGGCCTGCCTTGA GCGATTGCCCGAGCTGCTTGAAGAGCTCACCGGCAGGATGGGGCGACTTGATGGTGGCTATCGGCCGGGCAAACCCTTCGTCAAGCTCAAATTCCACGAC TTCACCCAGACGACCCTCGAACAGGCGGGGGCCGGCCTTGAGCTAGAGGATTATGCCGACCTTCTTGCTGGCGCCTTTGCGCGAGGCAAGCGCCCGGTGC GGCTGATTGGCGTCGGGGTTCGCTTGATCGACCTGCGCAGCGGTTTCGAGCAACTGCGCCTGTTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GTCGTTCGTTGCGCGGGTTTGCCTTGGTCGATGTCGACTCCGGCATTTGCGAAGGCCCTGTTGAGCGATCTTCCGCGACGAAACCTACCGTCAGAAATAA GCAGGGCCGCTCACTGAGCGGCCCTCTGCTTGGGTGTAAAAGAGGGGATCCCTGGCCTGCCTGTACCAGGGCCCCCGAAACCGGTTACCTGGATATTTGC ATGGGGCGTGCCAGTTTCGGAACGCTGGTTTGCCGCGCGGTGCCTGGCTGACTCATCGAGTGCGACTGAATGATCTTCCTGCAGCCACATGCCCAGTAGT TAGGCCGCCTGCACCGATTTGATTGGATCAGTAACGGGAACGTCGGAGGCAGCGCATCGACGCATCGAGCAGGGAGGGCGCGCGGGGCGCCCGGTTTTCT GCACTGTTTCAGTCTGTTTGAAGTGTTTGCGCTGGTTGCAATGCCCAGCTTTGGCGCAGCTCAGTTCTGTTCCGGCCAGACGCGAAGCGGGGCACCGTCA
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Amino Acid Sequence |
>DNA polymerase IV
MPPVNTSRKIIHVDCDCFYAAIEMRDDPSLANRPIAVGGLADRRGVIATCNYEARAYGVRSAMASGHALKLCPDLLILRPRMDAYKEASREIHGIFRTYT DLIEPLSLDEAYLDVSACKHFAGSATRIAQDIRRRVWQQLRITVSAGVAPNKFLAKIASDWKKPDGLFVITPDQVDDFVLALPVTKLHGVGRVTADKLKR LGIHTCADLRTWKRLDLVRDFGSFGERLWGLAHGIDERLVQIESRRQSVSVENTYDRDLPDLAACLERLPELLEELTGRMGRLDGGYRPGKPFVKLKFHD FTQTTLEQAGAGLELEDYADLLAGAFARGKRPVRLIGVGVRLIDLRSGFEQLRLF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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