Strain | Pseudomonas sp. StFLB209 DNA, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
GCGGCACAATACGAGAGCTGGAGCCTGCCGCTGGCGGTGATCCTGATCGTACCGATGACCCTGCTGTCGGCGATTGCCGGGGTGATCATTGCAGGGAGTG ACAACAACATCTTCACCCAGATCGGCTTGATCGTACTGGTCGGCCTGGCGTGCAAGAACGCAATCCTGATCGTCGAGTTCGCCAAGGACAAACAGGAAGA AGGCCTCAGCCCGCTGGACGCGGTACTGGAAGCCTGCCGCCTGCGGCTGCGGCCGATCCTGATGACCTCCTTCGCGTTCATCATGGGCGTGGTGCCGCTG GTGCTGTCCAGCGGCGCCGGTGCCGAAATGCGTCATGCCATGGGCGTGGCGGTGTTCTCCGGGATGCTCGGGGTGACCTTCTTCGGCCTGTTGCTGACCC CGGTGTTCTACGTGCTGATCCGTAACTTCGTCGAGCGTCGCGAGGCCCGCAAGGCGGCCCGCATCGCCCAACAACCGACTCACTCCGTGGAGGCGCATTG
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DNA Sequence for Gene |
>PSCI_RS23420
ATGAGTGCCCTGAAACTCTTCGCCCCTTCCTTGCTGGTGCTGGCGCTGGCGGCCTGCGCCGTCGGCCCGGACTACAAGGCCCCGACCACAGCTGACGCCA GCGCCCAGGCCGCTGGCGCCCAGGCGGCCTATGACCGCAGCCGCAGCGCCGCCAACTGGTGGCAGCAGTTCGACGATGCGACCCTGAACAAACTGGTCGA GCAGTCTCTGGCCGGCAACCGTGACCTGCGGGTGGCGTTCGCGCGCCTCAAGGCCGCCCGGGCGATCCGCGATGACGTCAGCAACGACGCCATGCCGGTG ATCACCAGCCGCGCCAGCAGCCAGATCGGCAAGGGCCAGGTCCCCGGCCAGACCGAAGACCGGGTTAACAGCGAACGCTACGATCTGGGCCTGGACATGG CTTGGGAAGTCGACCTGTTCGGTCGCATCCAGCGCCAACTGCAAGCCAGCGATGCCGACCAGCAGGCGGCCGAAGCCGAGCTGTACCAGTTGCAAGTGAC CCTGATCGCTGATGTGGTCGATGCCTATGGCCGCCTGCGCGGTGCCCAGCTGCGTGAAGCCATTGCCCGCGACAACCTGAAAAACCAGCAGGACTCGCGC AACGTCACCACCCAACTGCGTGACGCCGGGGTGGGAAATGAACTGGACGTGGTGCGCGCCGATGCACGCCTGGCCGCAGTCGAGGCCAGCGTGCCGCAAC TGCAGGCCGAACAGGTGCGCCAGCGCAACCGCATCGCGACCCTGCTGGGCGAACGCCCCGATGCACTGAGTGTCGATCTGAGCCCGGCCGGGCTGCCAGC GATCAGTAAAACCCTGGCCGTCGGTGATCCGACCCAGGTGTTGCGCCAGCGGCCTGACGTCTGGGCCGCCGAACGGCAACTGGCGGCGTCCACCGCACGC ATTGGTGTGGCCACCGCCGACCTGTTCCCACGGGTAAGCCTCAGCGGTTTCCTGGGGTTTACCGCCGGGCGCGGTTCGCAGATCGGTTCTCAGGCGGCCA AAGCCTGGAGCCTGGGCCCGAGCATCACCTGGGCGGCCTTCGACCTGGGCAGCGTCCGTGCCCGGATTCGCGGTGCCGACGCCGACGCCGAAGGCGCGCT GGCCAGCTACGAGCAGCAGGTATTGCTAGCCCTTGAAGAGTCGCAGAATGCGTTCAGCGATTACGACAAACGCCAACAGCGCCTGCTCGCCCTGCTGCGC CAGAGCAACGCGAGCCGCGAGGCGGCCCGTCTGGCCTCGGTGCAATACCGCGAAGGCACGGCGGATTTTCTGGTCCTGCTCGACGCCGAGCGTGAGCGCC TGGCTGCCGAAGACGCCCAGGCTCAAGCGCAGATCGAGTTGTATGAAGGCATCGTCGCCATCTACAAAGCCCTGGGCGGCGGCTGGCAACGGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TGGCCCGGCTTCTTGTTTTTGCTGCTCGAACCGAGATAGTACTGACACCGCCGAACGCGACTTGGGTGCAGGCCGAGGGTAGGCGTCGATTCGGGGGAGA AACCGACATGGATGTCGGTTTCAGGTGCGCTGGGCAGGACGCCCATCGCGCCGGCCCCCGAATCGGCGCCGGACGGAGGGAAGTCTGCCCGCAGGGCAGA CCCAAACCAGGAGCAAGCGGTTTTCCCCTATTTTGCCAAGCACAAAATAGGGTCGCCCGTCGGGGCGAAACCCGCAGTTCAGACAACCGCGGCAACGATC CTTACATTGGACCCAGCCATTGGCACGAAAAGCCACACGGTGGCTTACCGCGCCGCCGTCAAACCCACCGGCGCCGGCACCGCTCTGGCCTTGGCCTGCA ACTGGGTCTGAAAGCGCTGCCATTCGCGGTTGATTTCCGAGTACGGCATGAAAATGCTGACCTGGGCTTGCGCCGGCAAGTCGGCGCGTTTGAGCGCCTG
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Amino Acid Sequence |
>RND transporter
MSALKLFAPSLLVLALAACAVGPDYKAPTTADASAQAAGAQAAYDRSRSAANWWQQFDDATLNKLVEQSLAGNRDLRVAFARLKAARAIRDDVSNDAMPV ITSRASSQIGKGQVPGQTEDRVNSERYDLGLDMAWEVDLFGRIQRQLQASDADQQAAEAELYQLQVTLIADVVDAYGRLRGAQLREAIARDNLKNQQDSR NVTTQLRDAGVGNELDVVRADARLAAVEASVPQLQAEQVRQRNRIATLLGERPDALSVDLSPAGLPAISKTLAVGDPTQVLRQRPDVWAAERQLAASTAR IGVATADLFPRVSLSGFLGFTAGRGSQIGSQAAKAWSLGPSITWAAFDLGSVRARIRGADADAEGALASYEQQVLLALEESQNAFSDYDKRQQRLLALLR QSNASREAARLASVQYREGTADFLVLLDAERERLAAEDAQAQAQIELYEGIVAIYKALGGGWQRA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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