Pseudomonas sp. StFLB209, PSCI_RS22160
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. StFLB209 DNA, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGTATTCACCGACTGCAGCGACGAGATGACCATCGTGCGCGAAGAAATCTTCGGCCCGGTGATGAGCATCCTGACTTACGACAGCGAAGAAGAAGTCATC CGCCGCGCCAACGACACCGACTACGGCCTGGCTGCCGGTATCGTCACCCAGGACCTGACCCGCGCCCACCGCGTGATTCACCAGCTGGAAGCCGGTATTT GCTGGATCAACGCCTGGGGTGAGTCGGCCGCGCAAATGCCTGTCGGTGGCTACAAACAGTCCGGCGTCGGTCGTGAAAACGGCATTTCGTCTCTGGCGCA GTACACCCGCATCAAGTCGGTGCAAGTCGAGCTGGGCGACTACGCGTCCGTCTTCTGAACAACGCGATATTGAGTAACCGCGCAAGGAGCGACCTTGGTC GCGAAGGGGCCGTATCAGGCGCTACATCTCTAGCGCCTTCAAGTCCGCCTTCGCGAGCAAGCTCGCGCCTACAATTGCCCCATGATAGAGGACGCATTTT
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| DNA Sequence for Gene |
>PSCI_RS22160
ATGTCCCAAGAATACGATTACATCATCATCGGTGCCGGCTCGGCCGGTAACACCCTCGCCGCTCGCCTGACCGAAGACCCTGGTGTCACGGTCCTGCTGC TCGAAGCCGGCGGCCCTGACTACCGCCTCGACTTCCGCACCCAGATGCCGGCAGCACTGGCCTTTCCGCTGCAGGGCCGACGCTACAACTGGGCCTATGA AACCGATCCTGAGCCACACATGAATAACCGGCGCATGGAGTGCGGTCGCGGCAAGGGCCTGGGTGGCTCGTCGCTGATCAATGGCATGTGCTATATCCGT GGTAACGCCATGGACCTCGACCGCTGGGCTCAGCTGCCGGGCCTGGAAGACTGGAGCTACCTGGACTGCCTGCCCTACTACCGCAAGGCCGAAACCCGCG ACATCGGCGCCAACGACTGGCACGGTGGTGAAGGTCCAGTGAGCGTGGCGACGCCCAAGCCCAACAACAACCCGCTGTTCGCCGCGATGGTCGAAGCCGG CGTGCAAGCCGGTTACCCGCGCACCGAAGACCTCAACGGCTACCAGCAGGAAGGCTTCGGTCCGATGGACCGCACCGTGACCCCGAAAGGTCGTCGTGCC AGCACCGCCCGTGGCTATCTGGACACCGCCAAACAGCGCGACACCCTGACCATCGTCACCCACGCCATGACCGACCGCATTGTGTTCAACGGCAAACGCG CCAGTGGCGTGCGTTACCTGATCGGTGACAGCAGCGCTGTTCATGAAGCCTGGGCACGCAAAGAAGTGCTGCTGTGCGCTGGCGCGATTGCCTCACCGCA GATCCTGCAGCGCTCCGGCGTCGGCCCGGCCGAACTGCTGGAAAAACACAATGTACCGGTGGTCCACGACTTGCCGGGGGTCGGCGAAAACCTGCAAGAC CACCTGGAAATGTACATCCAGTACGCCTGCACCCAGCCGGTCTCGCTGTACCCTTCGCTGTTGTGGTGGAACCAGCCAGCCATTGGCGCCGAATGGCTGT TCAACGGCACCGGTATCGGCGCCAGCAACCAGTTCGAGGCCGGCGGTTTTATCCGTACCCGTCCCGAGTTCGAATGGCCGAACATCCAGTACCACTTCCT GCCCGTGGCGATCAATTACAACGGCACCAACGGCGTCAAGGAACATGGCTTCCAGGCCCACGTCGGCTCGATGCGCTCGCTGAGCCGTGGCCGGGTGCAG ATCAAGTCAAAAGACCCGCACGAGCATCCAAGCATCCTGTTCAACTACATGGCGACCGAGCAGGACTGGCAGGAATTTCGTGATGCGATCCGGATTACCC GCGAGATCATTGCCCAGCCGGCACTGGACGCTTACCGTGGCCGCGAGATCAGCCCGGGCCTGGAGGTCAAGACCGACGAGCAGCTCGATGCGTTCGTGCG TGAACACGCCGAAACCGCGTTCCACCCGTCCTGCTCGTGCAAGATGGGCACCGACGATATGGCAGTGGTCGATGGCCAGGGCCGTGTCCACGGCCTGCAA GGCTTGCGGGTCGTCGATGCGTCGATCATGCCGGAGATCATCACCGGCAACCTCAACGCCACCACCATCATGCTCGCCGAGAAGATCGCCGATCGCATCC GTGGTCGTCAGCCGCTGCCGCGCAGCAACGCCAAATACTTCAAGGCCAACGGCGCCCCGGTACGTCGCGCGCCTATGCGCAAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACTGAACACACCGACGGCATCCCGGCTCTGGAAGCAGTGCAGGAAGCTGTTGTAGCGCCAGAGCCGGTCACCCAATAAACCCCGGCGTCGCGTAGCAAAC ACGGAACCCCGTAGGAGCAGCTTCAGCTGCGAAGCCTTTCGCAGCTGAAGCTGCTCCTACGGGAAGGCCTATACCGCCCCCGTCGTCGGTATGCCGCCCA GACCAATGTCGCTCACAGGATGTCTACGCCACTGCGGCCGTGGCAATCCCAGATGCTCGCGTAACGTGCGACCTTCATAGCGCTCGCGGAACAGCCCGCG CTGGCGCAGGATCGGCAGCACCCCTTCGACAAAAGCATCCAGCCCTTCAGGAAAATGCGCCGGCATCAGATTGAAACCGTCGGCGGCTTCGTTCTCGAAC CAGGCAATCATCTCGTCCGCCACCTGCTGAGCGGTGCCCACCACAATCCGGTGCCCCCGTGCCCCGGCAGCCAGGTGACAGACCTGACGCAGGGTCAAAC
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| Amino Acid Sequence |
>choline dehydrogenase
MSQEYDYIIIGAGSAGNTLAARLTEDPGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYNWAYETDPEPHMNNRRMECGRGKGLGGSSLINGMCYIR GNAMDLDRWAQLPGLEDWSYLDCLPYYRKAETRDIGANDWHGGEGPVSVATPKPNNNPLFAAMVEAGVQAGYPRTEDLNGYQQEGFGPMDRTVTPKGRRA STARGYLDTAKQRDTLTIVTHAMTDRIVFNGKRASGVRYLIGDSSAVHEAWARKEVLLCAGAIASPQILQRSGVGPAELLEKHNVPVVHDLPGVGENLQD HLEMYIQYACTQPVSLYPSLLWWNQPAIGAEWLFNGTGIGASNQFEAGGFIRTRPEFEWPNIQYHFLPVAINYNGTNGVKEHGFQAHVGSMRSLSRGRVQ IKSKDPHEHPSILFNYMATEQDWQEFRDAIRITREIIAQPALDAYRGREISPGLEVKTDEQLDAFVREHAETAFHPSCSCKMGTDDMAVVDGQGRVHGLQ GLRVVDASIMPEIITGNLNATTIMLAEKIADRIRGRQPLPRSNAKYFKANGAPVRRAPMRK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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