Pseudomonas sp. StFLB209, PSCI_RS13020
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. StFLB209 DNA, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGCCCGTGAACAGCAGATCGACCCGCTGACCATCAAGGGCTCCTATGCCGGGGCGATGGGGCTGCCGCAGTTCATGCCCAGCAGCTTTCGCGCCTATG CGGTAGATTTCGACGGTGATGGCCATATCAACATCTGGACTGATCCGGACGATGCCATCGGCAGTGTTGCCAGTTATTTCAAGCGTCACGGCTGGGCAGC GGGCCAGCCAGTGGTCAGCCGCGCCAATGTCTCGGGCGCGCAAGCCGAGCAGGGCCTGAGCCCTGGGCTTGATCCGGTCATGAGCCTGGGAGAGTTGCGA GGCCTGGGCTGGGCAAGTCATGATGCGCTGCGCGATGACCTGCCAGTGACCGCGTTTCGCCTGGAGGGTGACAACGGGCCCGAATACTGGATAGGGTTGA ACAATTTTTACGCGATCACTCGCTATAACCGGAGTGTGATGTACGCCATGGCCGTGCATCAGCTCTCCGAATCTCTGGTTCAAGCTCGAGGCGTCAAGTA
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| DNA Sequence for Gene |
>PSCI_RS13020
ATGCGGGCAAGTACCTCATTCAAATTGCTGGTGTATGTCGGGATCGGTCTGGTGCTTGCCAGCTGCTCGTCGTCCAGCCGCTCACCGCAACACAGCGGCA GTCAGGCCGTGCGCTCTGCGCCGGGGCTGGACATCAACCGCGCCCACAAGGATGGCGCGCCATGGTGGGATGTGGATATCTCGAAGATTCCCGACGCCAC CCCGACCCTGCACACCGGTGCCTTCAAGGCCAACCCCTACACCGTGTTGGGCAAGAGTTATTTTCCGATGAACGATGGTCGGCGCTATGTGGCCACCGGT ACGGCATCCTGGTATGGCACCAAGTTCCACGGCCAGAACACCGCCAACGGCGAAGTCTATGACCTGTATGGCATGAGTGCCGCGCACAAGACCTTGCCGC TGCCGACCTACGTGAAGGTCACCAACCTCGACAACAACCGCACTGTGGTACTGCGGGTCAACGATCGCGGGCCGTTCTATTCGGACCGGATCATCGACCT GTCCTATGCTGCGGCCAAGAAGCTTGGCTATGCCGAAAGCGGCACGGCGCGGGTCAAGGTCGAAGGCATCGATCCTCAGGAGTGGTGGGCCCAGCGTGGC CGCTCGGCGCCGTTGATGATGGCCCAGGCACAGCCGGCTCCCAAGCCCGCCGCGCCGGTGATCACTGCCTCGGCCGGGACCATCGAGCAATGGACTCCGC CGCCTCAGCAACACGCCGCGCCGCCTGTACCCTTGCAGGACGAGGCAAAAAAAAACGCTTCAGGATCAGCCGATGGGCTGTTTCTCCAGGTCGGAGCCTT CGCCAATCCGGATGCTGCGGAGCTGCTGCGCTCGAAGCTGAGCACGATGGTCCGCGCACCGGTGTTCGTCAGTTCCATCGCCCGCAACCAGCAGACGCTC TATCGCGTGCGGATGGGGCCGGTGGCGACGCAGGGTGAGGCCCAGCAACTGCAGGACAGCGTAAGGTCGGCCAACCTGGGGCAACCCAGTGTGGTAACCG CCGATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCACCGCTGCCGGCGACATGTGCGCCGGTGGTGCGCAGCGTGCCTCAATCTGCCGTGCAGAGCAGGAGGCGGCGTTGTAGACGGCAATGCCCTGTGGGG CTTGCCTGCCAGGTTTGGCCTGGCATTACGGGACCTCGTGGGCGGCGCTGCCTGCGACGGATCCTTGAGTTTTGCCCGCGAGGGCATATCTGCCCATTCA GCAATTTCGAGAGACGGATGAACATCACAACCTTCGCAAAACGTCTGTGCCTGCTAGTGCCACTGATGATCGCCCCCACTGCATGGGCCGTAGAGCAGAT GACACCGGCTGCACCGCAGTTGGCCGCCAAGTCCTACGTGCTGATGGATGCCGCCAGCGGTAACGTTCTGGTGGAGAGCAACGGCGACCAGCGTCTGCCG CCAGCCAGCCTGACCAAACTGATGACCGCCTATATCGCGACCCTGGAAATCCGTCGTGGCCAGATCGGTGAAAATGACCCGGTAACCGTCAGTGAAAATG
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| Amino Acid Sequence |
>lipoprotein
MRASTSFKLLVYVGIGLVLASCSSSSRSPQHSGSQAVRSAPGLDINRAHKDGAPWWDVDISKIPDATPTLHTGAFKANPYTVLGKSYFPMNDGRRYVATG TASWYGTKFHGQNTANGEVYDLYGMSAAHKTLPLPTYVKVTNLDNNRTVVLRVNDRGPFYSDRIIDLSYAAAKKLGYAESGTARVKVEGIDPQEWWAQRG RSAPLMMAQAQPAPKPAAPVITASAGTIEQWTPPPQQHAAPPVPLQDEAKKNASGSADGLFLQVGAFANPDAAELLRSKLSTMVRAPVFVSSIARNQQTL YRVRMGPVATQGEAQQLQDSVRSANLGQPSVVTAD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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