Pseudomonas sp. StFLB209, PSCI_RS12355
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. StFLB209 DNA, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGGGCCGTGACCATGAGGACATCGTCGAAGCCATTGCCGCCAAGGACGCCGATGCCGCCGAACAGGCTGCCCATGAGCATACGATGCTGTTCCAGCGCCG CTTCCTGGATTTCATGCAGCAGAACCTGACCGCGCCGGTTCGGGTTTACTGACCATACAGTTAGGTACTGTTTATCTCGGTGGGAGCGACCTTGGTCGCG AAAGGGCCGGTAAGGTCACAGCATCTGCTGTGAATGTGCCGCAGTCTTCGCAAGCAACCGGAGCGCGGGCCGGCTGCTCCCACCGGTCTAACCGAACAGA TTGGCTGATCGCCCGACACTCATTGTGTAAATAACGTAAAAACAATTTACTCCTATATGAGATTAAATATCATTCCGCCCGTTGGAGCGGCGGGGAAGCC TCTGGAGCAAGGTTTCAGGCACTATTAAGCAGGTTTGGATAAAGCCTTTTCCGCCGTTTTTCTGCCCGTCTCGGGCGCACGATCAATGGGGAAGATGGAC
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| DNA Sequence for Gene |
>PSCI_RS12355
ATGAATCCGAAGTACAAGCCTAACCTGCTGGCGTCAGCCATCGTTCTGGCCTGCAGTGCGCCGGTCGGCGCTGCCGAAGTGATCGGCGCAGCCGCTGACG AAGTCGTCAAACCGGACAGCGTACTGCCTGCCGATGGCTCGCCAGAGGCGCTGGAACTGGGCGATACCCATGTCATCGGCACCGCCGAGCAGGAACTCAA GCAGGCGTCGGGCGTGTCTATCATCACCGCCGAAGACCTCAAAAAGCGTCCGCCGGTCAACGATATTTCCGAGATCGTGCGCAAGATGCCCGGCGTCAAC CTGACCGGCAACAGCACCACCGGCAGCCGTGGCAACAACCGGCAGATCGACCTGCGCGGTATGGGGCCGGAAAACACCCTGATCCTGATCGACGGCAAGC CGGTGACTTCGCGTAACTCGGTGCGCATGACCCGTACCGGCGAGCGCGATACCCGTGGCGACAGCAACTGGGTGCCGGCTGAAATGATCGATCGCATCGA GGTGCTGCGCGGCCCGGCGGCGGCCCGTTATGGTTCCGGCTCCATGGGCGGGGTGGTCAATATCATCACCAAGCGCCCGACCGACAAGCTGCAAGGCTCG ATTACCGCTTACACCAACCTGCCTGAAGACGACGCCGAAGGGGTGACCAAACGCACCAATTTCAGCCTCGCCGGCCCGCTGACCGACGCCCTGAGCTTCC GGGTCTACGGCAACCTCAACAAAACCGATGCCGACGATCTGGACATCAACTGGGCCAAGACCGATGCGGCAGCGGCGGCTGATGGTATTTCGCCGACCTA CGCTGCCGGTCGTGAAGGGGTGCGTAACAAGGACATCAACGGCCTGCTGTCGTGGCGCCTGGATGAAGCGCAGACCATCGACTTCGAAGCCGGCTACAGC CGTCAGGGCAATATCTACGCGGGCGACACCGGTGGCGATGCGATCAACGACTCGGCGGCCCTGCAAGAGCGTATTTCGGCGCTGTATGGCCGTGAAACCA ACACCCTGTACCGTCAGACCTACTCGATTACCCATCAGGGCGATTGGGCGTTCGGCACCTCGAAGCTGACCGCGCAGTACGAAGGCACCCAGAACCGCCG CCTGCAGGAAGGCTTGTCGGGCGGCAGCGACGGCAACATCAACGCCGATGCCAGCGAGATCACCAGCGATTACGACAGCTTCCTGGTCAGTGGTGAGGTG AACATCCCGCTGGAGATGCTGGCGCATCAAGTGCTGACCATCGGCGCCGAATGGAACCGGCAGACGCTCGATGACCCGTCGGCGCTTAATCAGACCGTCA GCGGTGCCGGCTCCGGCGGTTCTGCGCTGCCTAATTCGGTGGCCGGGTCGCGGCCGACCGATATGGACGCAACCATCGCCGCCGTGTTCATCGAGGACAA CATCGAACTGACCCCGGACTGGATGCTGACCCCCGGCGTGCGCCTGGACCACCATGACCAGTTCGGCTCCAACTGGAGCCCGAGCCTCAACACATCGTAC AAACTGACCCCCGATATCACCCTAAAAGGCGGTATCGCCCGGGCCTTCAAGGCGCCGAACCTGTACCAGTCCAACCCCAACTACCTGCTGTTCAGCATGG GCATGGGCTGTGATCCGACCTTCAACCTCGGTGGCGGGTGTTACATCCTGGGCAATGACAGCCTTGAGCCAGAAGTCAGCGTCAACAAGGAAATCGGCAT CAGCTTCGATCGTGATGGCTGGAGCGCAGGCCTGACCTACTTCCGCAACGATTACGACAACAAGATCACCTCGGGTATTACCGTGCGTGAACTGGCCACC GGCGGCACCAACGCCTCGCCAGTGCTGCGTTGGGAAAACGCCACCGACGCGGTGGTCAAGGGCTGGGAAGGTAACCTGACCGTGCCGTTGCTGGGCGAAC GTGGCGAGACGCTGAGCTGGAGCACCAACTTCACCTATATGGATGAAAATGCTGATCGTACCGGCCAGCCGCTGTCGGTGATCCCGGAGTACACCATCAA CTCGTTCCTCGACTGGCAGGCCACTGACAAGCTGGCGCTGAACCTCAATGCCACTTGGTATGGCAAACAGGAGCCGCGTACCCTGAACCCGACCCTGCCG TCTTCGGGGCCGATCACCGCCGCCAATGCCTTGTCCACCCGTGACCCTTACCACCTGTGGGGCGTGGGCGGCAGCTACGAGTTCAGCAAGAACCTGTCGG TGGGTGCCGGTATCAACAACCTGTTCGACAAGCGGATGTACCGTGAAGGGCAGGGCACCAGTCAGGGCGCCAACACCTACAACGAGCCAGGCCGTTCGTT CTACGCTTCGGTTACCGCTTCGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGATCCGAGCGTTACCGCCTGCAATGACCGCTTCGCTGTGAGGCGGTCTCTGCGTTTTCAGGGATCACCATGAGTTCTGCCAGCTACCTCACCGACGTTG CCTACCCGCATCACTTCCAGACCCAGGCCACCTCCAACTGGCTGGCCTTTGTTGCCACCGCGCTGGGCCGTGCGGTGCCGGATATCAGCCGCGCTTACCG CAGTTGTGAACTGGGTTGCGGGCAGGGCTATGGCGCCGTTATCAACGCCGCTGCCAACCCCAACGGGCACTTTGTGGCAGTGGATATCAACCCTCGGCAT ATTGCGCATGGGCGCGCCTTGGCCGCTGCGGCCGGAGTGGCCAATATCGAGTTTATCGAGGCGAACTTCCGTGATTTCGCTGAATCTTGTGCGCATGACA CATTCGATTTTGTGATCAGCCACGGGGTCTACTCCTGGGTCAGCCCGGCGGTGCAAGGCGAGATGCGCCAGGCTGTCGCGCAGTTGCTCAAGCCCGGCGG
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| Amino Acid Sequence |
>outer membrane receptor protein
MNPKYKPNLLASAIVLACSAPVGAAEVIGAAADEVVKPDSVLPADGSPEALELGDTHVIGTAEQELKQASGVSIITAEDLKKRPPVNDISEIVRKMPGVN LTGNSTTGSRGNNRQIDLRGMGPENTLILIDGKPVTSRNSVRMTRTGERDTRGDSNWVPAEMIDRIEVLRGPAAARYGSGSMGGVVNIITKRPTDKLQGS ITAYTNLPEDDAEGVTKRTNFSLAGPLTDALSFRVYGNLNKTDADDLDINWAKTDAAAAADGISPTYAAGREGVRNKDINGLLSWRLDEAQTIDFEAGYS RQGNIYAGDTGGDAINDSAALQERISALYGRETNTLYRQTYSITHQGDWAFGTSKLTAQYEGTQNRRLQEGLSGGSDGNINADASEITSDYDSFLVSGEV NIPLEMLAHQVLTIGAEWNRQTLDDPSALNQTVSGAGSGGSALPNSVAGSRPTDMDATIAAVFIEDNIELTPDWMLTPGVRLDHHDQFGSNWSPSLNTSY KLTPDITLKGGIARAFKAPNLYQSNPNYLLFSMGMGCDPTFNLGGGCYILGNDSLEPEVSVNKEIGISFDRDGWSAGLTYFRNDYDNKITSGITVRELAT GGTNASPVLRWENATDAVVKGWEGNLTVPLLGERGETLSWSTNFTYMDENADRTGQPLSVIPEYTINSFLDWQATDKLALNLNATWYGKQEPRTLNPTLP SSGPITAANALSTRDPYHLWGVGGSYEFSKNLSVGAGINNLFDKRMYREGQGTSQGANTYNEPGRSFYASVTASF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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