Pseudomonas sp. StFLB209, PSCI_RS12280
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. StFLB209 DNA, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GGTACAGGTCGATAACGAGCAGGTGACCATCACCGAGTGGCGCTTCGCGCCGGGTGCCGAGACTGGCTTGCATCGCCATGGTTATGACTATGTGGTGGTG CCGCTGACCAGCGGCACCTTGCTGCTAGAAACCCCAGAGGGCGATAAATACGCGCCCTTGGGAGCTGGGCAGAGCTACTTTCGCAAAGCCGGTGTTGAAC ACAATGTGATCAACGCCAGTGACCATGAAGTGGTATTCGTCGAGACCGAACTCAAACCGCAGCGTTAATAGCCAACTGGCAGCCAGCGCTGCCAGATTGA TCAAAGCTTCAGGCACGAAGACGTTCTGCGCCTGAAGCTGACGCCCCTTCCGACGAACGGTCGTCAGCGGTAAATAAATCGTCATAAAAAAGTGTGCGCC TTTTTGACGGTTTGGTGACCTGCGGCACACCACGGCAAAGATGACGGTGCTAGCATAGCGCCATCAACCCTCCTTTAGCCGCCTCTCCAGCAGCCCGCCA
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| DNA Sequence for Gene |
>PSCI_RS12280
ATGACCGAAGCATCTGATCCCAGTCGCGAGCGTCTCAAGCTTTATTTTGCCCAGCGGGTCGTGCTTCAGGTGCGGCAGATCCTTGAGATTTGGCAACGCC TGCATAAAGGCGAGTGGACGCCGACTGATCTGGATGAGCTCAAGGAAGCGGCTCGGGATCTGTTACGCAGTGCGGAACGCTTCGGGCAGACCGAGCATTT GCGTCTGGCGCAGCAGCTTGGTGATCTGGTCGCCAGCCTGCAAGCCAACCAGGGCCGGCTTAACAGCGAGTTGATCAGTGAAATCAGCCTGCTGATGCAG CAACTTTCGCAAACCGGCCTGCGTCATGGAGACCGGCTGCAGCAGACCACCCTGCCACCTCTGCGCACGCCTGTTTATATTGCCTTGCGTCACCGCGAAG ACAGTGAACAACTGGCCCGGCAACTGGAGTTCTTCGGGTGCGCAGCGCTGGCGCTGGATAACGTGGCCAGCCTGCACACGGCACTGCAACAGCGCCAGCC GGCGGCCATTATCATGGATGTTGATTTTTCCTCCCCCGGCGCAGGCCTGAAGCTGGCGACAGACTTGCAGCACACTCTGCCCGTCAGAGCGCCGCTGCTG TTTTTCAGTCGTGACGAAGCTGATACCCCCACCCGCCTGGCGGCGGTGCGCGCCGGTGGCGATGAGTTCCTGACCGGCTCACTGGACGCCTCGATTCTGC TGGAAAAGATCGAAACCCTGACCCGCGCCGATGGCTATGAGCCGTACAAGGTGTTGATCATCGACGATTCGCGCTCGCAGGCCCTCTACACCGAGCAGGC ACTCAATAGCGCAGGCATCGTCACCCGGATCTTGCTGGACCCGATCCAGGCCATGAGCGAGCTGGCGCAGTTTCAGCCAGACCTGATCATCCTCGATATG TACATGCCAGGCTGCACGGGGCGGGAGCTGGCCAAGGTCATTCGTCACAATGATCGTTATGTCGGCGTACCGATCATCTACCTGTCGGCCGAGGACGATC TGGATAAACAGCTTGATGCGCTGAGCGAAGCAGGCGATGACTTCCTGACCAAACCGATCAAGCCCAGGCATCTGGTGACCACGGTGCGCAACCGCGTCAA CCGGGCCCGGCACCTGAAGGCACGCATGATCCGCGACAGCCTGACCGGGCTGTTTAACCACACGCATATCCTCCAGTGCCTTGAAGACTGCTGCTTTCAG GCCCGCCGCGACAATAAGCCGCTGTGCTTCGCGATGCTGGATATCGACCACTTCAAAAGGGTCAATGACAGCCACGGCCACCCCATGGGCGACCGGGTGA TCAAAAGCCTGGCGCTGTTTCTCAAGCAACGGCTGCGCAAGACTGATCTGATCGGCCGTTATGGTGGCGAAGAGTTCGCCATCGTCATGCCCGACACCGA CCTCTACAACGCCCATAAGGTGCTGGACAGGATCCGTCAGGGCTTTGCCGAAGTGCATTACCCCGCCCAACCACTGGACCTGGCCTGTACCTTTAGCGCC GGAGTGGTCAGCCTGCATCCGCAAGACGATAGCCAGACCCTGGCCGCTTTGGCCGACAGTGCGCTGTACCGCGCCAAGAAGTCCGGGCGCAATCAGGTCC AGTCAGCCTTGAATACAGCAAACCACGCACTTGAATGGCCGGCCATCGAGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACCCGCTCTTACAAACCGCTCTCCAGCACAATCCGGCGCGCTTGGTTATCATGCGCACCTTTGCCGCGATTTGAGGTTGCCATGCGCCGCCTGCTACTG ATCATGCTGTTGCTGCTCACCCTTCCCGTCCAGGCTCAGGCTTCCGGCCTACTGGACAGCCGCCCCTCGGCAACGCTGGGCAGCTCGACCCTGGATAACA GCAAGCAATTTCTGCCGGTCCGCCAGGCTTTCCAGCTGAGCCTGATCGAAACCACACCGCAGGCGGTCAAGCTGCGCCTGGTGGCGGCTGACGGCTATTA CCTGTATCGCCATCGCTTCCAGTTCCGCAGCGAGCCGGCCGATGCCGGCCTGGGCGAAGCGCGCCTGCCCGCCGGTGAACAGAAGCATGACGAGTACTTC GGCGACGTGGAGGTCTATCACGGCATCGTCGATATCGAGTTGCCGCGCAACCCCGATGAGCAGCGCCCGTTCACCCTGGCCGTCACTTATCAGGGCTGCG
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| Amino Acid Sequence |
>diguanylate cyclase
MTEASDPSRERLKLYFAQRVVLQVRQILEIWQRLHKGEWTPTDLDELKEAARDLLRSAERFGQTEHLRLAQQLGDLVASLQANQGRLNSELISEISLLMQ QLSQTGLRHGDRLQQTTLPPLRTPVYIALRHREDSEQLARQLEFFGCAALALDNVASLHTALQQRQPAAIIMDVDFSSPGAGLKLATDLQHTLPVRAPLL FFSRDEADTPTRLAAVRAGGDEFLTGSLDASILLEKIETLTRADGYEPYKVLIIDDSRSQALYTEQALNSAGIVTRILLDPIQAMSELAQFQPDLIILDM YMPGCTGRELAKVIRHNDRYVGVPIIYLSAEDDLDKQLDALSEAGDDFLTKPIKPRHLVTTVRNRVNRARHLKARMIRDSLTGLFNHTHILQCLEDCCFQ ARRDNKPLCFAMLDIDHFKRVNDSHGHPMGDRVIKSLALFLKQRLRKTDLIGRYGGEEFAIVMPDTDLYNAHKVLDRIRQGFAEVHYPAQPLDLACTFSA GVVSLHPQDDSQTLAALADSALYRAKKSGRNQVQSALNTANHALEWPAIEA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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