Pseudomonas sp. StFLB209, PSCI_RS09590

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. StFLB209 DNA, complete genome. [Details]
DNA Sequence Upstream of Gene
GGAGAAGTGGCCGTCTCAGCGGCCGTGAGCACCGTCGCGCCCGGCCTTAAAGACTCAGCCAAGGTCGTGTGGAAATCCGGTAAAGCTATCAAGTCCCTGT CAGGTCAGGCTGCCAATACCGCCAACCGTGCGGCCAAGCTGGCAGCACGCAAAGCCGCCCATGCCAAGACCATCAAAGAAACCGTAGCGACCCAGGCAGG CTGGCAGTCAGCCAAAGCCGTAGGCAAGTGCCTGTTCGGGGAAGGAGAAAAAGATGAGTGTGAATAACCATGCTTAAGCAGTTCTTGATCGTGTTCGTGG TTGGCCTGCCGTTCGCAATTCTCTACAGCGTTCTGGACAGGTACCTGCCCAATAGCTGGTGGCCAGCCGGAATCGTCATCACGTTGATGCTGGCTGCACG AATCGGGTTGTACCTGTACCGACGCTCCAAAGGTATTCGGGATACGTGGCTGGATCCGTGACCCAGCCCTGAACCGAAGATAACCAACGAGATCACCGCC
DNA Sequence for Gene
>PSCI_RS09590
ATGAGCTTTCAGCAACTGACCCGCATGACCCAAGTCACCAGCCCGCTCGGGCCGGATGTGCTGTTGCTCAAGGACATGAGCGGTGGCGATGAGTTGGGCC GGTTGTTCAATTATGAGCTGCAACTGACCTCCAAGGACGGTGCGCTGGACCTCAACCAGTTGCTCGGCAAGCCCATGAGCCTGTCGGTGCAGCTGGGCGG CGGTGGCCAGCGTTACTTTCATGGCATCGTCGCCCGCTGCAGCCAGAACGTTGATCGTGGCCAGTTCGCCAGTTATCAGGTGACCCTGCGGCCCTGGCTG TGGCTGCTCAGCCGCACCTCCGACTGCCGGATCTTCCAGCACCTGAGCGTGCCGCAGATCATCAAGCAGGTGTTTCGTGATCTGGGTTTTTCTGATTTTG AAGACGCGCTGAGCCGTCCCTATCGCGAGTGGGAATACTGCGTGCAGTACCGCGAGACCAGCCTGGATTTTGTCAGCCGGCTGATGGAACACGAGGGCAT CTATTACTTTTTCCGCCACGAGCAGGACCGTCATGTGCTGGTGCTGGCCGACGCTTACGGCGCGCATCAGTCGGCGCCCGGCTACGCCTCGGTGCCGTAC TTTCCACCCGATGGCCAGCACCGTGAACGTGACCACTTCAATGACTGGCGGCTGGCTCAGGAAGTGCAGCCCGGTTCGCTGGAGCTTAATGACTACGACT TCGAACGGCCCAGCGCCCGCATGGAAGTGCGCTCGGCCATGCCGCGCCCGCACAGCGCCGGCGATTACCCGCTGTACGACTATCCCGGCGCCTACGTGCA GAGCCAGGACGGCGAGCACTATGCCCGCACCCGCCTCGAAGCCCTGCAAAGCCTGCATGAACGGGTCGAGCTGAGCGGCAATGCCCGCGGCCCCGGTGCC GGGAACCTGTTCAGCCTGACCGGCTTTGGCCGCCAGGATCAGAACCGTGAATACCTGGTGGTCGCCGGGCGTTATTACATCGCCCAGGAAAGCCTGGAGA GCGGTAACGGCGGTGGCTTGCAGTTCGAGGTCGGGCTGACCTGCATCGACGCCCAGCAGAGCTTCAAGCCGCTGGCGAGTACCATCAAACCGCTGGTGCA GGGGCCGCAGACCGCCCGTGTCGTCGGGCCGGCCGGTGAGGAGATCTGGACCGACCAATATGGCCGGGTGAAGGTGCATTTCTACTGGGACCGGCACGAT CAGTCCAACGAGAACAGCTCGTGCTGGATTCGGGTTTCGCAATCGTGGGCCGGCAAGAACTGGGGTTCGATGCAGATCCCGCGCATCGGTCAGGAAGTGA TCGTCAGCTTTCTGGAAGGTGACCCGGACCGGCCGATCATCACCGGTCGGGTGTACAACGCCGAACAGACGGTGCCCTACGACCTGCCCGCCAACGCCAC CCAAAGCGGCATGAAAAGCCGCTCCAGCAAGGGCGGCACGCCGGCCAACTTCAATGAAATCCGCATGGAGGACAAGAAGGGTCAGGAGCAGTTGTTTATC CATGCCGAGCGCAATCAGGACATTGAGGTCGAGAACGACGAGAGCCACTGGGTGGGCGCCAACCGCACCAAGACCGTGGACAAGAACGAGACCGTGACCA TCGGTATTGATCGCCTGCGCGCGGTCAAAAACGACGACATTCTGCTGGTCGGCTCGACCAAGACCGACAGCATCAGCCGCAGCTACCTGATCGAGGTTGG TGAAAACCTGCGCCTGGTGTGCGGCAAGAGCGTGCTGGAACTCAATGCCAGCGGCCAGATCAACCTGACCGGGGTGAACATCAACTTCTACGCCAGCGAC ACCGCGCTGTTCAACACAGGAAAAATCCTGCACCTGAACAACGGCAGCGGCTCGGGCACCGAGGCCGACGGCCAGGGCGTCAAGGGTCAGATCGACGCCG CAGTCGAGCAGATGTTTCCCAAGCCTGAAGGCAGTCAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCAGAACAGGAACCCGGCTTCATGACCTATCGCATCAATGAATTGAGCTTCGCCCTGCCTGATCAGCAACTGCAGGACGCGACCATCAATATCCTCAAGT TCGGCGAGCTGGGCACTTCGCTGATCGTCAGCCGCAGCCTGCTGGCCGAGGGCGAGACCCTGCACAGCAACTTCGCCACCCAGCTGGAGCGCCTCGGCCA GCAGGTTCAGGAACTGCGCCACGACCCGGTGCAAACCGTGCAGGTCGGCCAGCAGCAGGAAGTCGAAGCCATCGAGCTGCGCAGCGAGTTCAGCAAGGGC AACGAGCGGGTCTATCAGTTTCAGCTGGCGGTGGTACTGCCCGGCACCCGGCGCATGCTCGCCCTGAGCTACGTCAAGGCACAGCCGCTGGGCGCGGCCG AAGTGGCGCAGTGGACGGGTATCAAGCAGTCGCTTGATTTCGCCGCCCTCGGCTGATCGGCCCCGGACCGTACAGGGATGATTGATCATGTCTGACGTCG
Amino Acid Sequence
>type VI secretion protein ImpA
MSFQQLTRMTQVTSPLGPDVLLLKDMSGGDELGRLFNYELQLTSKDGALDLNQLLGKPMSLSVQLGGGGQRYFHGIVARCSQNVDRGQFASYQVTLRPWL WLLSRTSDCRIFQHLSVPQIIKQVFRDLGFSDFEDALSRPYREWEYCVQYRETSLDFVSRLMEHEGIYYFFRHEQDRHVLVLADAYGAHQSAPGYASVPY FPPDGQHRERDHFNDWRLAQEVQPGSLELNDYDFERPSARMEVRSAMPRPHSAGDYPLYDYPGAYVQSQDGEHYARTRLEALQSLHERVELSGNARGPGA GNLFSLTGFGRQDQNREYLVVAGRYYIAQESLESGNGGGLQFEVGLTCIDAQQSFKPLASTIKPLVQGPQTARVVGPAGEEIWTDQYGRVKVHFYWDRHD QSNENSSCWIRVSQSWAGKNWGSMQIPRIGQEVIVSFLEGDPDRPIITGRVYNAEQTVPYDLPANATQSGMKSRSSKGGTPANFNEIRMEDKKGQEQLFI HAERNQDIEVENDESHWVGANRTKTVDKNETVTIGIDRLRAVKNDDILLVGSTKTDSISRSYLIEVGENLRLVCGKSVLELNASGQINLTGVNINFYASD TALFNTGKILHLNNGSGSGTEADGQGVKGQIDAAVEQMFPKPEGSQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site