Pseudomonas sp. StFLB209, PSCI_RS06840

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00633
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006284 base-excision repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00056
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0019104 DNA N-glycosylase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01084
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016798 hydrolase activity, acting on glycosyl bonds
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR42944
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pses03410 Base excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00633 Helix-hairpin-helix motif IPR000445 Helix-hairpin-helix motif 105 134 2.9E-8
Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein IPR003265 HhH-GPD domain 41 173 5.3E-19
CDD cd00056 ENDO3c IPR003265 HhH-GPD domain 37 194 1.36755E-51
NCBIfam TIGR01084 JCVI: A/G-specific adenine glycosylase IPR005760 A/G-specific adenine glycosylase MutY 11 283 2.3E-107
Gene3D G3DSA:3.90.79.10 Nucleoside Triphosphate Pyrophosphohydrolase - - 231 354 5.2E-17
FunFam G3DSA:1.10.340.30:FF:000002 Adenine DNA glycosylase - - 27 141 8.0E-49
SUPERFAMILY SSF55811 Nudix IPR015797 NUDIX hydrolase-like domain superfamily 226 351 9.7E-25
SUPERFAMILY SSF48150 DNA-glycosylase IPR011257 DNA glycosylase 10 231 2.98E-74
Gene3D G3DSA:1.10.1670.10 - IPR023170 Helix-hairpin-helix, base-excision DNA repair, C-terminal 15 216 3.0E-87
PANTHER PTHR42944 ADENINE DNA GLYCOSYLASE IPR044298 Adenine/Thymine-DNA glycosylase 10 351 5.5E-104
Pfam PF14815 NUDIX domain IPR029119 Adenine DNA glycosylase, C-terminal 243 349 8.1E-22
CDD cd03431 DNA_Glycosylase_C IPR029119 Adenine DNA glycosylase, C-terminal 248 351 9.94673E-19
SMART SM00478 endo3end IPR003265 HhH-GPD domain 45 196 3.3E-45
Gene3D G3DSA:1.10.340.30 Hypothetical protein; domain 2 - - 27 138 3.0E-87

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.