Pseudomonas sp. StFLB209, PSCI_RS02585

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00072
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008134 transcription factor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01590
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pses02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF02954 Bacterial regulatory protein, Fis family IPR002197 DNA binding HTH domain, Fis-type 401 441 1.7E-10
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 407 424 1.2E-9
FunFam G3DSA:3.40.50.2300:FF:000018 DNA-binding transcriptional regulator NtrC - - 5 135 2.0E-39
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 5 193 2.56E-41
CDD cd17549 REC_DctD-like - - 9 138 4.86682E-66
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 359 443 1.43E-11
Gene3D G3DSA:1.10.8.60 - - - 319 392 8.2E-22
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 424 443 1.2E-9
Gene3D G3DSA:1.10.10.60 - - - 393 443 2.2E-14
PANTHER PTHR32071 TRANSCRIPTIONAL REGULATORY PROTEIN - - 7 443 3.3E-129
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 148 318 3.5E-59
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 148 377 2.06E-66
FunFam G3DSA:3.40.50.300:FF:000006 DNA-binding transcriptional regulator NtrC - - 140 318 1.3E-70
CDD cd00009 AAA - - 149 312 4.30879E-22
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 168 309 2.0E-7
Pfam PF00158 Sigma-54 interaction domain IPR002078 RNA polymerase sigma factor 54 interaction domain 148 314 1.0E-64
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 9 117 5.0E-25
Gene3D G3DSA:3.40.50.2300 - - - 7 147 1.5E-31
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 7 118 6.5E-29

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.