Strain | Pseudomonas sp. StFLB209 DNA, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
CAGAAAAACATCGGCCCAAGCGGCATTGTTGTTGTGATCATTCGCGAAGACCTGCTCGGTCGTGCCCGCGCCCTGTGCCCGACCATGCTCGACTACAAGG TCGCGGCTGACAATGGCTCGATGTACAACACGCCGCCGACCCTGGCCTGGTATCTGTCCGGGCTGGTGTTCGAATGGCTCAAGGAGCAGGGTGGCGTCGA GGCCGTGGCCAAGGTCAATGACCTCAAGCAGCGCACCCTGTATGACTACATCGATGCCAGCGCGCTGTACAACAACCCGATCAACAAGGCTGACCGCTCG TGGATGAACGTGCCGTTCCGCCTGGCTGACGACCGCCTGGACAAACCGTTCCTGGTCGGTGCCCAGGCCAATGGTCTGCTCAACCTCAAGGGGCATCGCT CGGTAGGTGGCATGCGTGCCTCGATCTACAACGCCGTGGGCCTGGATGCCGTCAATGCGCTGGTCGCCTACATGAAAGACTTCGAGAAGGAGCACGGTTG
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DNA Sequence for Gene |
>PSCI_RS01760
ATGTCCGATCAGGAACTCAAGGCGCTTCGCGTGCGCATCGACGCACTCGACGAGAAGATCCAGGAACTGATCAGCGAGCGGGCACGCTGCGCCCAGGACG TGGCGCGGGTGAAGATGGCGACCCTGGCCGAAGGCGAGGCGCCGGTGTTCTATCGGCCCGAGCGTGAAGCTCAGGTGCTCAAGCGGGTCATGGAGCGTAA CCGTGGCCCGTTGAGCAACGAAGAAATGGCGCGTCTGTTCCGTGAGGTCATGTCTTCGTGCCTGGCGCTGGAGCAGCCGCTCAATGTTGCCTATCTCGGT CCTGAGGGCACCTTCACCCAGGCAGCGGCCATGAAGCACTTCGGCCATGCAGTGGTCAGCCGGCCGATGGCCGCGATCGACGAAGTGTTCCGCGAAGTGG TTGCCGGTGCGGTGAACTTTGGTGTGGTGCCGGTCGAAAACTCCACCGAGGGTGCGGTCAACCACACGCTCGATAGTTTTCTTGAGCATGACATGGTGAT CTGTGGCGAGGTCGAGCTGCGCATCCACCATCACCTGCTGGTGGGCGAAAGCACCAAGACCCAGAGCATCACCCGCATCTACTCCCATGCCCAGTCCCTG GCCCAGTGCCGCAAATGGCTGGATGCGCACTACCCGAATGTCGAGCGCGTGGCGGTGGCAAGCAATGCCGATGCCGCCAAGCGGGTGAAAAGCGAGTGGA ATTCGGCAGCGATTGCTGGCGATATGGCGGCTAGCCTGTATGGCCTGACCCGTTTGGCAGAAAAGATCGAAGATCGTCCAGACAACTCCACGCGTTTTCT GATCATCGGCAATCAGGAAGTGCCGCCGACCGGTGATGATAAAACCTCGATCATCGTGTCGATGAGCAACAAGCCGGGCGCCCTGCATGAGCTGTTGGTG CCGTTCCATGAAAACGGCCTGGACCTGACCCGCATCGAGACCCGTCCTTCGCGCAGCGGCAAGTGGACCTATGTGTTCTTCATCGATTTCGTCGGGCATC ATCAGGACCCGCTGGTCAAGGCCGTGCTGGAGCAGATCCGCCAGGAAGCCGTAGCGCTCAAAGTGCTGGGTTCCTACCCCAAAGCGGTGCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
AATCATGAGTGTGCAATCCAACGGGCCGCTGATCGGCCGCCTGGTGGTGGTCGGGCTCGGTCTGATCGGTGGCTCCTTTGCCAAGGGTATTCGCCAGAGC GGTTTGTGCCACGAGGTGGTGGGGGTTGACCTCAATGCCCAGTCGCGCCGCCTGGCGGTCGAGTTGGGCGTGGTGGACCGTTGCGAAGAGGATCTGGCCA AGGCCTGTGAGGGCGCCGACGTGATCCAGTTGGCGGTGCCGATACTGGGCATGGAGAAGGTCCTGGCGCGTTTGGCGCCGCTGGACCTTGGCAACGCCAT CCTCACCGATGTCGGCAGCGCCAAGGGCAATGTGGTGCGTGCCGCGCAAGAAGCATTCGGTGCAATGCCGGCGCGATTCGTGCCTGGGCATCCGATTGCC GGTTCTGAGCAGAGCGGCGTCGAAGCCTCGAATGCCGACCTGTTCCGTCGCCACAAGGTAATCCTCACGCCGCTGCCGCAGACCGATCCGGACGCGGTCA
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Amino Acid Sequence |
>prephenate dehydratase
MSDQELKALRVRIDALDEKIQELISERARCAQDVARVKMATLAEGEAPVFYRPEREAQVLKRVMERNRGPLSNEEMARLFREVMSSCLALEQPLNVAYLG PEGTFTQAAAMKHFGHAVVSRPMAAIDEVFREVVAGAVNFGVVPVENSTEGAVNHTLDSFLEHDMVICGEVELRIHHHLLVGESTKTQSITRIYSHAQSL AQCRKWLDAHYPNVERVAVASNADAAKRVKSEWNSAAIAGDMAASLYGLTRLAEKIEDRPDNSTRFLIIGNQEVPPTGDDKTSIIVSMSNKPGALHELLV PFHENGLDLTRIETRPSRSGKWTYVFFIDFVGHHQDPLVKAVLEQIRQEAVALKVLGSYPKAVL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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