Pseudomonas sp. StFLB209, PSCI_RS00380
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. StFLB209 DNA, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ATGTCGATCAGGTGTTCGCTGCCGGCATGGCCGAGTGGCTGAGCAGTGCCTCAGGCATGCCGGTGCGCCTGGCCCGCGAGGGCGAGCCGCCGCAACCGGG TCAGGTGGTGCTGGCCGGAACCAACCACCATATCCGTCTGTTTCAGGACGGGACGCTCGCCTACACGGCCGAGCCGGTAAACGAAATCTACAGGCCCTCG ATTGATGTTTTTTTCGAAAGTGTGGCCCGCTATTGGAGTGGTGATGCAGTGGGAGTGTTACTGACCGGCATGGGTCGCGATGGTGCTCAAGGACTCAAGG CCATGCGCCAGAAAGGATTTCTGACCATCGCTCAGGATCAGGCCAGCAGTGCCGTATATGGCATGCCCAAGGCGGCTGCCGCCATCGATGCCGCCGTCGA GATCCGCTCGCTGCGCACTATCGCTCCGCGTTTGGTTGAGGTATTCGCATAATGATTTTCCAGGTGAAATCACCTTCAGCCGGTGACCAGGAGATGCTTC
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| DNA Sequence for Gene |
>PSCI_RS00380
ATGCATGACTTGCAGACAGAAGATATCAAGGCTCCGGACGAAAACTCCGCCATGGTCCTGTTGGTCGATGACCAGGCCATGATCGGCGAGGCGGTACGTC GCGGCCTGGCCAATGAAGAGCTGATCGACTTCCATTTCTGTGCCGACCCGCATCAGGCTATTGCCCAGGCGGTGCAGATCAAACCCACGGTGATCCTTCA GGACCTGGTGATGCCGGGCCTGGACGGCCTGACCCTGGTGCGTGAGTACCGCAACAACCCGTTGACCAAGGACATCCCGATCATCGTCCTGTCGACCAAG GAGGACCCGCTGATCAAGAGCGCGGCCTTCGCGGCCGGGGCCAACGATTACCTGGTCAAGTTGCCCGATACCATCGAACTGGTGGCGCGCATCCGCTACC ACTCGCGTTCCTACCTGACCCTGTTGCAGCGCGACGAGGCCTACCGCGCCTTGCGGGTCAGCCAGCAGCAACTGCTCGACACCAACCTGGTACTGCAGCG GCTGATGAACTCCGACGGCCTGACCGGGCTGTCCAACCGTCGTCACTTCGACGAATACCTGGAGCTGGAGTGGCGCCGCGCCACCCGCGAGCAAAGCCAG CTGTCACTGATGATGATCGATGTGGACTATTTCAAGGCCTACAACGACAGCTTTGGCCATCTGGAAGGTGACGAAGCCCTGCGCCAGGTGGCCAAGGCAA TCCGTGCCAACTGCAGCCGTCCCTCGGACCTGCCGGCCCGCTACGGCGGCGAAGAATTCGCCATGGTATTGCCCAACACCACCCCCGGCGGCGCCCGATT GCTGGCCGAAAAACTGCGCCAGAGCGTCGCCAGCATGAACATCCCGCACATTGCACCGGCACCGGGTTCACACCTGACGGTCAGCATCGGCATCGCCACC GTGATCCCACAGCCCGGCGGCAACAGCCGACAGTTGATTCTGGACGCTGACAAGGGGCTGTATGCGGCCAAGCATAATGGGCGTAATCAGGTGCAGGTGG GCGGGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGGCAATGGGGTCGCCGGATCAGTCTCCTGCGGCTCGGGCATGATGCTGGGTCGGTGGGAGTCAGCTTGCTGACGAAGGCGGCATCACAGGCATCGTGGG TTCACCCGCCGTTGAAGTGAATGCGCGGCGTCCCCGTCCGACGGGGCTGCTTTCGCCACTACGCCTAGGGTATACTCACCGGCTTTGTAATTTTCGCCTG CGAGTGCTGCCGACCATGGAAATCAACCCGATTTTGAACAGCATCAAGGACCTCTCCGAGCGTTCCGAAACCATTCGGGGGTATCTTTGACTACGATCAC AAACATGATCGTCTGGTTGAAGTCACCCGCGAGCTCGAAGACCCTAACGTCTGGAACAAGCCTGAATACGCCCAGAGCCTGGGCCGCGAGCGCTCCCAGC TGGAGCAGATCGTCACCACTCTCGATGACCTTGGCAGCGGCCTGACCGACGCCAAAGACCTGCTTGAGATGGCTGCCGAAGAAGAAGACGAAGGCGCTGT
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| Amino Acid Sequence |
>diguanylate cyclase
MHDLQTEDIKAPDENSAMVLLVDDQAMIGEAVRRGLANEELIDFHFCADPHQAIAQAVQIKPTVILQDLVMPGLDGLTLVREYRNNPLTKDIPIIVLSTK EDPLIKSAAFAAGANDYLVKLPDTIELVARIRYHSRSYLTLLQRDEAYRALRVSQQQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRATREQSQ LSLMMIDVDYFKAYNDSFGHLEGDEALRQVAKAIRANCSRPSDLPARYGGEEFAMVLPNTTPGGARLLAEKLRQSVASMNIPHIAPAPGSHLTVSIGIAT VIPQPGGNSRQLILDADKGLYAAKHNGRNQVQVGGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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