Pseudomonas sp. RIT288, BW33_RS27270
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT288 contigs9, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGCGCGCCAGGCTTTATTGGCCTTCAACTGGCCGGGCAACGTGCGGCAGTTGCGCAATGTCCTGCGCACATTGGCGGCGTTGTGTGATGAGGGCCGGAT CGGGCTGGAGGATCTGCCGGCGATGATTCGGCAGGGGCGGCCGCCAGCGGCGGAATCCATTCCCTGCGAGCAGCCTCTCGAGGATGCCGAACGATTGGCG TTGCTCAATACACTTGAACGCACGCGCTGGCACATGACTCACACCGCCGAGCAACTCGGTGTGAGCCGCAACACCCTCTACAGAAAGCTGCGCAAACACG GCATCGCCCGAACCGCATAAATCCCCCTGTAGGAGCTGCCGAAGGCTGCGATCTTTTGATCTTGTTCTTTATAGGATCAAAAGATCGCAGCCTCGTTGCA CTCGTCAGCTCCTACAGTCGTGGTCGTGGTGGTGATCAGCTAAAGAGTGCGATTTCCCCCTCCCTGCGCTAACCTGCGGCCATGTTTTACGAGGTCGACT
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| DNA Sequence for Gene |
>BW33_RS27270
ATGCACATTCATATTCTGGGTATCTGCGGGACTTTCATGGGCTCGATGGCGGTTCTGGCCAAAGAGCTGGGCCATCACGTGACCGGCTCCGACGCCAACG TCTATCCCCCGATGAGCACGCAGCTTGAGGCCCAGGGCATTCAACTGACCCAAGGCTACGACCCGGCTCAGCTCGATCCGGCGCCGGATCTGGTGGTGAT CGGCAACGCCATGTCCCGCGGCAACCCGGCGGTGGAATATGTGCTGAACAAAGGCCTGCCGTACGTCTCCGGCCCGCAATGGCTGGCCGATCATGTGCTG CAAGGACGCTGGGTGCTGGCGGTTGCCGGCACGCACGGCAAGACCACCACCAGCAGCATGCTCGCCTGGGTGCTGGAACACGCCGGCATGAGCCCGGGGT TCCTGATCGGCGGGGTGCCGCAGAATTTCTCGGTGTCCGCACGTCTGGGCGGCACACCGTTCTTCGTGATCGAGGCTGATGAGTACGACAGCGCGTTTTT CGACAAGCGTTCGAAGTTTGTCCACTATCGTCCGCGCACCGCGATCCTAAACAACCTTGAGTTCGATCACGCCGACATCTTCCCGGATCTGCCGGCGATC GAGCGGCAGTTCCACCATTTGGTGCGCACCATTCCGAGCGAAGGTCTGGTGATCCATCCGACCACCGAGCCTGCCTTGCAGCGAGTGATCGAGATGGGCT GCTGGACCCCGGTGCAAACCACCGGCGTCGGCGGGCAGTGGCAGGTCAAGTTGCTCAAGGACGATGGCTCGGCGTTCGAAGTGATGTTCGAAGGCGTGTC CCAGGGCACTGTCGAGTGGGATTTGACCGGTCAGCACAACGTCGCCAACGCCTTGGCTGCGCTGGCAGCGGCGCGGCATGTCGGAGTGGTGCCGTCGATG GGCATCGCCGGGTTGAGCGCATTCAAGAACGTCAAACGCCGCATGGAGAAAGTCGCCGAAGTGCGCGGCATCACCCTCTACGACGACTTCGCCCACCACC CGACCGCGATCGCCACCACCCTCGATGGCTTGCGCAAGCGCATCGGCGACGCACCGCTGATCGCGATCATCGAGCCGCGCTCCAACTCGATGAAGCTCGG CGCGCACCGTGACGGTCTGCCGGACAGCGTGGTCGATGCCGATCAGGTGATCTGGTACGCCCCGGCCAACCTCGGTTGGGATCTGGCAGCCACCGCCGCG CTGTGCAGCGTGCCGTCGATTGTCAGCGATTCGCTCGAAGGCATCATCGAACGGGTGAAGAGCCAGGCCCAGCCCGGCACCCACGTGGTGATCATGAGCA ACGGCGGCTTTGGCGGCCTGCACGGCAAGCTCGCCGAGGCGCTGAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACACTTTTGCCCAGGACGGCCCGGAACGCATCACGCTGGCGATGACCGGCGCGTCCGGCGCGCAGTACGGTTTGCGCCTGCTCGACTGCCTGGTGCGGGA AGATCGCGAGGTGCACTTCCTGATCTCCAAAGCTGCGCAACTGGTGATGGCCACTGAGACTGATGTCACGCTGCCGCCCAAGCCGCAGATGATGCAGGCG TTCCTCACCGAGTACACCGGGGCGGCCGCCGGGCAGATCCGCGTGTACGGCAAGGAAGACTGGATGTCGCCGGTAGCCTCGGGTTCCGGCGCGCCAGCGG CGATGGTTGTGGTCCCGTGTTCCACCGGTACCTTGTCGGCGATTGCGACGGGCGCGTGCAACAACCTGATCGAGCGCGCGGCGGACGTCACCTTGAAGGA GCGCCGCCAGTTGATTCTGGTACCGCGCGAGGCGCCGTATTCGAGCATTCATCTGGAGCACATGCTCAAGCTGTCGAACATGGGCGTGACCATCCTGCCG
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| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSMAVLAKELGHHVTGSDANVYPPMSTQLEAQGIQLTQGYDPAQLDPAPDLVVIGNAMSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGVPQNFSVSARLGGTPFFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAI ERQFHHLVRTIPSEGLVIHPTTEPALQRVIEMGCWTPVQTTGVGGQWQVKLLKDDGSAFEVMFEGVSQGTVEWDLTGQHNVANALAALAAARHVGVVPSM GIAGLSAFKNVKRRMEKVAEVRGITLYDDFAHHPTAIATTLDGLRKRIGDAPLIAIIEPRSNSMKLGAHRDGLPDSVVDADQVIWYAPANLGWDLAATAA LCSVPSIVSDSLEGIIERVKSQAQPGTHVVIMSNGGFGGLHGKLAEALK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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