Pseudomonas sp. RIT288, BW33_RS19500
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT288 contigs4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TATTACTTCATCTACACGGTGTTGTTCCTGGTGGTACTGGCCGTGCTGTACATCAAACATCGTCTGGTGAAAATGCCGGTGGGTCGCGCTTGGGAAGCCC TGCGCGAAGATGAAATCGCCTGCCGCTCGATGGGCCTCAACCACGTACTGGTCAAGCTTTCGGCGTTCACCATCGGTGCATCGACCGCGGGCCTGGCCGG GGTGTTTTTCGCCACCTACCAGGGCTTCGTCAACCCGACCTCGTTCACCTTCTTCGAATCGGCGCTGATCCTCGCCATCGTCGTGCTCGGCGGTATGGGC TCGACCATCGGCGTGGTGATTGCGGCATTCGTGTTGACGGTTGCTCCGGAACTGCTGCGCGGCTTCGCTGAATATCGCGTGCTGCTGTTCGGCATCCTGA TGGTGTTGATGATGATCTGGCGACCACGAGGGCTGATTCGCATCAGCCGTACCGGGGTCACTCCACGCAAAGGTGCCATTCACTATGAGAGGACTGCGCC
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| DNA Sequence for Gene |
>BW33_RS19500
ATGAGTGAAGTCGTACTCTCTGTGGAAAAACTGATGATGCACTTCGGTGGCATCAAGGCCCTGAGCGATGTCAGCCTCAAGGTCAAACGCAACTCGATCT TCGCCCTGATCGGCCCCAACGGCGCCGGCAAGACCACGGTGTTCAACTGCCTGACCGGGTTCTACAAGGCCTCTGGCGGCAAGATCGAACTCAACGTGCG CGGCAAGCAGACCAACGTCATCCAGCTGCTGGGCGAGTCGTTCAAGCCGACCGACTTTGTGTCGCCGAAAAGCTTCCTCAGTCGCCTGTACTACAAGATG TTCGGCGGCACCCACCTGGTGAACCGCGCCGGCCTGGCCCGGACGTTCCAGAACATTCGCCTGTTCAAGGAAATGTCGGTGCTGGAAAACCTGCTGGTGG CGCAGCACATGTGGGTCAACCGCAACATGCTCGCCGGCATCCTCAACACCAAGGGCTACCGCAAGGCCGAAAGCGATGCGCTGGACTGCGCGTTCTACTG GCTGGAAGTGGTCGATCTGGTGGACTGCGCCAACCGTCTGGCCGGTGAACTGTCCTACGGCCAGCAACGCCGTCTGGAGATCGCCCGGGCCATGTGCACA CGGCCGCAGATCATCTGTCTCGACGAACCGGCCGCCGGCCTCAACCCTCAGGAAACCGAAGCGCTGAGCGCGATGATCCGGCTGCTGCGCGACGAGCATG ATCTGACCGTGGTGCTGATCGAACACGACATGGGCATGGTCATGAGCATTTCCGACCACATCGTGGTGCTGGATCACGGCGTGGTCATCGCCGAAGGCGG GCCCGACGCGATCCGCAACGATCCGAAAGTGATTGCCGCCTACCTGGGCGCCGACGAAGAGGAGCTGGTATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAAACCGATCCTCGAACTCAAAGACCTGGACGTGTTCTACGGCCCGATCCAGGCCCTCAAAGGCGTGTCGCTGCAGATCAATGAAGGCGAGACCGTCAG CCTGATCGGCTCCAACGGCGCGGGTAAATCGACGCTGCTGATGTCGATCTTCGGCCAGCCGCGTGCGGCGGGTGGGCAGATCCTCTACCAAGGCGTCGAC ATCACCCACAAGTCCTCGCACTACATTGCCTCCAACGGCATCGCGCAGTCGCCGGAAGGGCGGCGGGTGTTCCCCGACATGACCGTCGAGGAGAACCTGC TGATGGGCACCATCCCGATTGGCGACAAGTACGCCAAGGAGGACATGCAGCGCATGTTCGAGCTGTTCCCGCGGCTCGAAGAGCGCCGCACTCAGCGGGC GATGACCATGTCCGGCGGCGAGCAGCAGATGCTCGCTATTGCCCGCGCCCTGATGAGTCGGCCGAAGCTGTTGTTGCTCGATGAGCCGAGCCTGGGCCTG
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| Amino Acid Sequence |
>ABC transporter
MSEVVLSVEKLMMHFGGIKALSDVSLKVKRNSIFALIGPNGAGKTTVFNCLTGFYKASGGKIELNVRGKQTNVIQLLGESFKPTDFVSPKSFLSRLYYKM FGGTHLVNRAGLARTFQNIRLFKEMSVLENLLVAQHMWVNRNMLAGILNTKGYRKAESDALDCAFYWLEVVDLVDCANRLAGELSYGQQRRLEIARAMCT RPQIICLDEPAAGLNPQETEALSAMIRLLRDEHDLTVVLIEHDMGMVMSISDHIVVLDHGVVIAEGGPDAIRNDPKVIAAYLGADEEELV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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