Pseudomonas sp. RIT288, BW33_RS18455

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. RIT288 contigs32, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ATGTCCTCACCTGAGTTTGCAGTGCAGGCGCTTTACAGTAGTCATCACAGCTGGCTCAACGCCTGGCTGCGGGCGCGGCTGGGCAACGCCGCGGATGCCG CGGATCTGGCCCAGGACACCTTCGTCCGTCTGTTGCAGCGCAGCGAACGTCTTGAACTCAAGGCGCCTCGCGCATTTTTACGCACCATCGCCCGGGGTCT GGTGATCGACCATTGGCGTCGTGAAGAAATCGAACGCGCCTATCTCGAAACCATCGCCCACTTGCCCGAAGCCGAAACCCCGAGCGCCGAAGCCCGCGCG TTGGTGATCGAGTTGCTTGAGAGCGTCGCGCGCATGCTCGAAGGCTTGCGGCCGAAAGTCCGTCAGGCGTTTCTGCTGGCGCAGTGCGAAGGTTTGACTC ACAAGCAGATCGCCGCGCAGATGGGTTTGTCCCTGCGCTCAGTCGAACGCTACGTCGCCGATGCGCTGTATCACTGCTACGTGTTGCGGTACGAAGCCTG
DNA Sequence for Gene
>BW33_RS18455
ATGCCTGCGGACAACAACTCAGCCGGGCGCCGCACCGAGCCGCAACAACAGGTGGTCAAGCAAGCCATCCACTGGTTGCTGCGGCTGCGCAACAACCATG GCAATGCGCGCCTGAGTCATCAGTGCGACGCGTGGCGCGCCGAGCATCATGAACATGAACTGGCGTGGCAGCGCGTGCAGTCGCTGCAGGCGGAATTGAG CCATAACCTGCGCACCGTGCCCGGCGCGCAGGTGGCATTCAATACGCTGGAAAACAGTGCGCAAGGGTTGGGGCGGCGACAAGCCTTGAAGCTGCTGTCT GGCGCGGTGCTGATGGGCTCCGCGGCATGGCTGGCCAAGGACACCTCCATCTGGCAGCAGTGGCGCGCTGATTACGCTACGGCGACCGGTGAACGCCGCA GCTTCCAGTTGCCCGACGGCACGCGGATCGAGCTGAACACTGCCAGCGCAGTGGATCTGGATTACACCCCGCAACAGCGGCTGATCAAACTCACCCGTGG TGAAATCATCGTCACGTGCGGCGGTAACGATGAAGGCGCGGCGTTCAACCGGCCACTTCGCGTGCAAAGTCGTCATGGCATTTATGAGCCGATAAAAGCC CGCTTCATCCTGCGTCAGGACAGCGATTGCACGCGGCTGACTGTCAGCTCAGGGAGCGTCGCCATCCGCAGCGGCGCAACCTCGGTCGAGGCGCTCGCCG GGCAGACCTATCTGATTGATCACCATCAGGTGCGCCCGGCACTGCCACTGAGTATGGAGGCGGGTGCGTGGGTCGACGGTTTGATCGTCACTCGCAACAT GCGCCTGGGCGATTTTCTCAACGAGGTCGGGCGTTATCGGCAGGGCTTCGTGACGTGTGCGTCGGCCGTGGCTGATTTGCGCCTGTCCGGGGTGTTCCGC CTGGAGGACACCGACAAGTTGTTGGCCATCCTGCCGCAGACTTTGCCGGTGCAATTGCGTTATCGCACCCGGTGGTGGGTAACGCTCGAGGCGGTGGCCT GA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AATTATTCTGGCGGGTTTTCGCAACGAGTCCGGCTTGGTCAGTAAGCACTTCAACTCAGCCTTTGTGACTGACCACGGAAACCGACAATGACTGTCCGCC TCACCTGTAAGAACCCGCTGAATTTCAATGACGAATCGGGCCTGCTGCGCCACGCGATTCGCGCCGCCCTGCTGTCCACCGTTCTGGGCGCCAGTGCGCT GCCCGGCGTGAGCCTCGCCGCCACTGCCAGTGAAGCGAGCAGTCATCGCTACAACATCGGCGCCGGCCCGTTGGGTGAAGCGTTGAACCAGTTTGCGCGC GAGGCGGGCATCACCTTGTCGATGACCCCACAGCAAACGCAGGGGCGGCAGTCTCCGGGCGTACAGGGCGAATATTCAACCGATCAGGCGTTGAGCCATT TGCTGGGCGGTTCGGGTCTGGAAGCGCTTAGCCAGGACGGCAGCAGCTACATCCTGCATTCAGTCAGCGAGAGCGCCGCACTGGCACTGCCGACCACCGA
Amino Acid Sequence
>peptide ABC transporter substrate-binding protein
MPADNNSAGRRTEPQQQVVKQAIHWLLRLRNNHGNARLSHQCDAWRAEHHEHELAWQRVQSLQAELSHNLRTVPGAQVAFNTLENSAQGLGRRQALKLLS GAVLMGSAAWLAKDTSIWQQWRADYATATGERRSFQLPDGTRIELNTASAVDLDYTPQQRLIKLTRGEIIVTCGGNDEGAAFNRPLRVQSRHGIYEPIKA RFILRQDSDCTRLTVSSGSVAIRSGATSVEALAGQTYLIDHHQVRPALPLSMEAGAWVDGLIVTRNMRLGDFLNEVGRYRQGFVTCASAVADLRLSGVFR LEDTDKLLAILPQTLPVQLRYRTRWWVTLEAVA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site