Pseudomonas sp. RIT288, BW33_RS17660

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. RIT288 contigs27, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GTTGGCCTGATGCAGCCATGGCGCTTCATTCGCATCAGCGACCGCGCCTTGCGTGGGCAAATCCAGAGCCTCGTCGAAGCCGAACGCATCCGCACCGCCG AAGCCCTCGGCGAGCGCAGTGACGAGTTCATGAAACTCAAGGTCGAAGGCATCAACGATTGCGCTGAAGTGCTGGTCGCGGCACTGATGGACGATCGCGA AAAACACATTTTCGGCCGTCGTACGCTGCCGGAAATGGACATGGCCTCGCTGTCCTGCGCGATTCAGAACCTGTGGCTGGCGTCCCGTGCCGAGGGACTG GGCATGGGCTGGGTGTCGCTGTTCGAACCGCAGGCACTGGCCGATCTGCTGCAATTGCCGGCTGGGGCAAAGCCGTTGGCGGTGTTGTGCCTGGGGCCGG TCAAGGAATTCTATCCGGCGCCGATGCTGGTTCTCGAAGGGTGGGCGCAGGCGCGGCCGCTCAATGAGTTGCTGTACGAAAATTATTGGGGAGTGAGTCA
DNA Sequence for Gene
>BW33_RS17660
ATGAGTGTGGCGTTGTTGAGTGTCGCCGCGGTCGCGCTGGATGCGCTGCTGGGTGAACCGAAACGCTGGCATCCGCTGGTAGCGTTCGGCAATTTTGCCG GGCGCATCGAGCGCCGTTTCAATGCGGGCGGGCGCGGCTGGCGCAGTCACGGGGTCACCGCGTGGGTGATCGCGGTGCTGCCGCTGACCTTGCTCGCCAC CGCGTTTTCATGGGCGCCGTATGTAGGCTGGATCGTCGAGATTCTTGCGCTGTATTGCGCCCTCGGCATGCGCAGCCTCGGTGAGCATGTCGCGCCGGTA GCCGCCGCTTTGCGCGCCGACGATCTGGAAGAAGCGCGCAAGCGTGTCGGCTATCTGGTCAGTCGCCAGACCAGCGAACTGGACAGCACCGCCGTCGCCC GCGCGGCCACCGAATCGGTGCTGGAAAACGGCAGTGACGCGGTGTTCGCCGCGCTGTTCTGGTTTGTCGTGGCGGGTGCGCCGGGCGTGGTGCTCTATCG CCTGAGCAATACGCTCGACGCGATGTGGGGCTATCGCAACGAACGCTTCGAGCGCTTCGGCTGGTGCGCGGCAAAAATCGACGACGTGCTCAACTACATT CCGGCCCGGCTGGTGGCGCTGACCTACGCGCTGCTGGGCAACACCCGGCTTGCCTGGAAATGCTGGCGCAGCCAAGGGCCGCAATGGGACAGCCCGAATG CCGGTCCGGTGATGGCGGCCGGTGCCGGTGCGTTGAATGTCGAACTGGGCGGCCCGGCGATCTATCACGGCGAACTGCATGAGCGGCCGCAACTGGGCGA AGGTCCGCCGGCGGATGCCGATTCGATTGATCGCGGGTGGCAATTGGTCCAGCGCGGGGTATGGTTATGGCTGCTGATTCTCTGCGTGGGGGCTGAATTC TATGCTTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCACGGTGGCCGGCTGCGCAAGGCTGCACTCGATTACGGGATTGCCGAGGCCGACTGGCTCGACCTGTCCAGCGGCCTCGCGCCGTGGCCGTTTGCGGTG CCGGAGATTCCGTTGCGGGCCTGGGCGCGATTGCCGGAAACCGATGACGGGCTGGAGCAGGCTGCGTGCGATTACTACGGCGCCTCGCAGGTGCTGCCGG TGGCCGGTTCGCAGATGGCGATCCAGTTGCTGCCGCGTTTGCGCCGCGCCGGCAAGGTCGGTGTGTTGTCGCCGTGTTATGCCGAGCACGCCGAAGCCTG GCGGCGCAGCGGTTACATCGTGCGCGAAGTGCTGGAGCAGGAGGTGGAATTCTTTCTCGACAGTCTCGACGTGCTGGTGGTGGTCAATCCGAACAATCCC ACCGGCCTGAGCCTGACCCCGGCGCGGCTGCTTGACTGGCACGCTCGACTGGCCCAACGCGGCGGCTGGCTGGTGGTCGATGAAGCGTTCATGGATAACA
Amino Acid Sequence
>cobalamin biosynthesis protein CobD
MSVALLSVAAVALDALLGEPKRWHPLVAFGNFAGRIERRFNAGGRGWRSHGVTAWVIAVLPLTLLATAFSWAPYVGWIVEILALYCALGMRSLGEHVAPV AAALRADDLEEARKRVGYLVSRQTSELDSTAVARAATESVLENGSDAVFAALFWFVVAGAPGVVLYRLSNTLDAMWGYRNERFERFGWCAAKIDDVLNYI PARLVALTYALLGNTRLAWKCWRSQGPQWDSPNAGPVMAAGAGALNVELGGPAIYHGELHERPQLGEGPPADADSIDRGWQLVQRGVWLWLLILCVGAEF YA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site