Pseudomonas sp. RIT288, BW33_RS14190
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT288 contigs2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGTCGGGCTCAGTTGTGTCTGGAGTCGCTCAAAAGGGTTGCAAAACACAAGATATAGTGAAAAACGCGGTTTTTTGCTCATTTCTTGAACAACCGAAGC CTCGCAAAAAAATTAATGAAAAAAAATTCTCGCAGGCCAATCCCAGCGAAAGCCCTGTAAACCCTCGCTCCGATCGAAATCACCCGGCCAATCGAACGGC CTGCGGTGTTTCGCCCTCCCCCACGCCCGTGTTTTTTTCCCTATAATGCCGCCCTAATCGGGTCAGCAATATTCCCTTACAGGGAGCAAAAGCCATTCTG AAGCCCCGCAGCAGCGTCAACGCTGATCTGCGCCCGTCAGAGGCTCTCGGAAACCCGTACAAAATTCTGTTTTATTGCCTGCCTTGGCTGCCGCAAAAAA CGATTCCTTAAGATCCAACGCGGTCTGTACGACCGTGTGAACAACCAACCAATCAGGTTTCACACGGGGCGACAGGCCCTCACGCAGGAGACGACACGTC
|
|
| DNA Sequence for Gene |
>BW33_RS14190
ATGCTGAGCTGGGACGAATTCGACAAAGAAGACAGTGAAGTAGCAGCAGTGAAAGGCGCCAACGCCGGCCACGCTACTGAAGCCAACATGGACCGCCTCG ACAACGCCGGCGGCGCCGCCGCGCTCGAAGCCCGCGCCGTGACCGCCGACGACTCGGCCGCCGTGGCCCGCGCCAAGGCTGCACTGAACTCCCTCGACGT CGCCGAAGGCCTCGCCGAACTCGAAGGCGCCTCCGCCCGTGTCGCCGTTGACGAAAAGCGCATGATCAACTGCCGCGCCGACCTCAACCAACTCGTACCA TTCAAGTACGACTGGGCCTGGCAGAAGTACCTGGACGGTTGCGCAAACCACTGGATGCCGCAAGAAGTCAACATGACCGCCGACATCGCCCTCTGGAAAA ACCCGGAAGGCCTGACCGACGACGAGCGCCGCATCGTGATGCGCAACCTCGGCTTCTTCTCCACCGCCGACTCCCTGGTTGCCAACAACCTGGTCCTGGC CGTGTACCGCCTGATCACCAACCCGGAATGCCGCCAGTACATCCTGCGCCAGGCCTTCGAAGAGGCGATCCACACCCACGCCTACCAGTACTGCATCGAA TCGCTGGCCATGGATGAAGGCGAGATCTTCAACATGTACCACGAGATCCCATCGGTCGCCAAAAAGGCAGCCTGGGGCCTGAAATACACTCGTTCGATCT CCGATCCGAAGTTCGAAACCGGCACCCCGGACACCGACAAAGAGCTGCTGCGCAACCTGATCGCCTACTACTGCGTTCTGGAAGGCATCTTCTTCTACTG CGGCTTCACCCAGATCCTCTCCATGGGCCGCCGCAACAAAATGACCGGCGTCGCCGAGCAGTTCCAGTACATCCTGCGCGACGAATCCATGCACCTGAAC TTCGGCATCGACGTGATCAACCAGATCAAAATCGAAAACCCACACCTGTGGGATGCCGAAATGAAGGAAGAAGCGACCCAGATGATCCTGCAGGGTACGC AGCTGGAAATCGAATACGCCCGCGACACCATGCCTCGCGGCGTACTGGGCATGAACGCGGCGATGATGGAGGACTACCTGAAGTTCATCGCTAACCGTCG TTTGTCGCAGATTGGTTTGAAAGAGGAATATCCAGGGACTACGAACCCGTTCCCTTGGATGAGCGAGATCATGGACTTGAAGAAAGAGAAGAATTTCTTT GAGACTCGTGTGATCGAATACCAAACTGGTGGTGCGCTTAGCTGGGACTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TGGTCTCGCTCGCCACGATTTGACGATTGCTGCTTGAGTCGTCGAATTGAGAAAGCAAAAAGCCCCGATTTGATCGGGGCTTTTTTATCGCGGCAGGTTG TCCTGTCCACTCTACGCTGCAGCACTTAATCTCCTTTGACCGCTTCAAAATGAAGCCTGTTACAAAAGACCCTAAGCTCCTTCGTAGTTGCTTCAGGACC ATCCAAATATCTAAAGTTCAGTCGTCGAAAACCCAACGGCCACTGAGAATGCCTTTCAGTTGTTCAACACTCAGCAGCTGCTGAGGTTTTTTATGTACGG TCGCGTGGCAATTGGCGCAGAGCGTAATCATGTCAGTAGCTGGGTCCACGACCTGATCTTCTTCGTACTCAGAAATTGGCTTCACGTGGTGTACATGGAT AAAGCCCTTAGCATGCTCGCCGTATGCCTTCTCAAAATCAAAATCGCAGGCATTACATTGGAGACCATGAATTTGGATTGCTTGCTGCCTAAGCTTTGGA
|
|
| Amino Acid Sequence |
>ribonucleotide-diphosphate reductase subunit beta
MLSWDEFDKEDSEVAAVKGANAGHATEANMDRLDNAGGAAALEARAVTADDSAAVARAKAALNSLDVAEGLAELEGASARVAVDEKRMINCRADLNQLVP FKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCIE SLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTPDTDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLN FGIDVINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFF ETRVIEYQTGGALSWD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|