Pseudomonas sp. RIT288, BW33_RS14100
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT288 contigs2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTGCTCATGTACACCCGCAACGGCTCGGTGATGTTGATCCGGTCATCGATGTTCTGATCCAGCAGCAACTGAATCAGCTCGCGTTTAAGCGTCATGGTCT GCGGCGTCGCCGGCGCCCAGACGAATTCATTCACAGGAATGATGCCGTCATCCGCCACGTCCATGCCGAACGAATCTTCGCTGAAACGCACGATGTACTG GCCGGTCTTGCGGTTGAGGCCGACAAAACCCTTGAGGTCATCGGCGGCCTGACAGATGAGTTGGGAAGTGATGCGCATGGTAAACCTCACGAAAAATCAT CGATGGTTTACACGCAGGGCAACAGGATCGGCGCGCTCTCTGCCGGAGCGTCTGCCGAGGGCAAGCGTACTGCAAACAGCGCCACAAAAGTGCAGGAAAA ATCGCTTTTAATACGTTTATGTCGGTCTGGCGATAGCACGCAATCCATTCAGTTGTTAAAAGGTACGTCTTTGAAAATGCCCTGCGAAAGGAACTCGAAC
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| DNA Sequence for Gene |
>BW33_RS14100
ATGCCCGCCACTTTCACCAAAAGCGCCCTCATGCTGAGCCTGATGCTCGGCCTCGGCCAGGCCCACGCCGCCCAGACTGACGTCAACGCACTGGCCGCCG CCCATGGCATCCCGCATCCAGCCGTGATCGCGCACCGTGGCGCGTCTTTCGATGCTCCGGAATCCACCGCCGCCTCCTACAAACTGGCCCGCGACCTCGG CGCCGACTACCTGGAAATGGATTTGCAGCGCAGCAAGGACGGCGTGCTGTTCGCCCTGCACGACAACAACCTGCAACGCACCACCGACGTCGCGACCAAG TTCCCGGAGCGCAAGGACAGCCCGGCCACCGCCTTCACCATGGCCGAACTGAAAACCCTCGACGCCGGCAGCTGGTACAACAAGGCTTACCCGGATCGCG CGCGTCCGACCTACGCCGGGCTGAAAATCCTCACCCTCGATGAAATCATCGACATCGCCCAGGCCAACCCGAAACACAAGCCGGGCCTGTACATCGAAAC CAAGGAGCCGCAACTGTTTCCGGGGATCGAGCATGACCTCAAAGAGAAGCTGCATGATCGCGGCTGGCTGAGTCCGGCCGGTTCGAAACTGGCCAAGAGC GAGCTGGGCGTCGGCCAGGGCAAAGGCAAGGTGATCCTGCAGACCTTCGAGAAGAACAGCCTCGAACTGCTGCAGAAGGAAATGCCGCAAGTGCCGAAGA TCCTGTTGCTATGGGTCGGCGAAGGCAGCATCGAGCCGAAATCGAAGGTGACCTTTTCCGAATCCGGCGAGAAGGACAAGAACGTGTTCTACGGCAAGCA GGAGCCGAAGTCCGAAGCCGAATTCAAGCAATGGGTGGATTTCGCCAAGGCGCAGGGTGCCATCGGCACCGGTCCTTCGGCCAAGCTGACCAAGGGTGGC GACCAGAGCTACTCGGATCTGGTGCAACCGTGGATGAACCAGTACACCCATGATCAGGGCATGCTGGTGCACGTCTACACCGTCGATGAGCCGGTGGACT TCGAGAAAGTCATGGCGGCCGGCGTTGACGGCATCTTCACCAACCGCGCCAGCGAACTGTTGAAGTTTTACAAGCGTCCGGCGGCGGCCAGTGTTGATCA GGTGTTGAAGAACAACGGGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGGTAAACCGGGTTGTCCGCATCGCGAGCAGGCTCACTCCTACAAGAGCCCTGCCCGCGATCTGGGGTTTTAAGGGTGAGTTAAGTTGCAGTGGTTAAC CTGAGCCCACTTCAACGAACAACCCAAGGAATGACCCGATGAAAACTTTGACTGCCCTGTTTACCGCCGCTGCCCTGACCCTGACTGCTGGCCTGGCCCA GGCTGATGTCCGCGTCGACCAGATCCCTGAGCTGGTCAAATCCGGCAAGATCAAGTCGCTGGAATCGATGAACGCCGAGGCACTGAAACTGCACCCGGGT GCGACCATCACCGACACCGATCTGGATAACCACTTCAACGGTTACGAGTACGAAGTCGAGCTGAAAACCGCCGATGGCAAAGAGTTCGACGTCGACTTCG ATGCCACCACCGGCAAAGTGCTGAGCAACAAGCAAGACACCTGATACACCGCCAAAGCAAAGCCGCACGATCAGCGATCGTGCGGCTTTTTTGCGTCCGT
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| Amino Acid Sequence |
>glycerophosphodiester phosphodiesterase
MPATFTKSALMLSLMLGLGQAHAAQTDVNALAAAHGIPHPAVIAHRGASFDAPESTAASYKLARDLGADYLEMDLQRSKDGVLFALHDNNLQRTTDVATK FPERKDSPATAFTMAELKTLDAGSWYNKAYPDRARPTYAGLKILTLDEIIDIAQANPKHKPGLYIETKEPQLFPGIEHDLKEKLHDRGWLSPAGSKLAKS ELGVGQGKGKVILQTFEKNSLELLQKEMPQVPKILLLWVGEGSIEPKSKVTFSESGEKDKNVFYGKQEPKSEAEFKQWVDFAKAQGAIGTGPSAKLTKGG DQSYSDLVQPWMNQYTHDQGMLVHVYTVDEPVDFEKVMAAGVDGIFTNRASELLKFYKRPAAASVDQVLKNNGF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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